Glyma18g50330 - SoyBase

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Report for Sequence Feature Glyma18g50330

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59497992
stop:	59499425
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g50330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39090	AT	Annotation by Michelle Graham. TAIR10: HXXXD-type acyl-transferase family protein \| chr5:15643612-15644958 FORWARD LENGTH=448	SoyBase	E_val: 2.00E-100	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
PF02458	PFAM	Transferase family	JGI		ISS
UniRef100_G7JQT5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isoflavonoid malonyl transferase n=2 Tax=Medicago truncatula RepID=G7JQT5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N4L3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N4L3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g50330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g50330

Paralog	Evidence	Comments
Glyma08g27120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g50330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g268300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g50330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g50330

Limit To All Plant Sequences

>Glyma18g50330.1   sequence type=CDS   gene model=Glyma18g50330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCAATCTCACAACATCAAAATCCACGACCACTTTAGCGTTTCCCCTCCCTCAGCAACAGCGACATCCCTCTCTCTCAAATTCTTCGACCTTTTCTGGCTCAGGTTCCACCCCGTGGAACGCATCTTCTTCTACACGCTTCCAACACCCCAATCAGACCCATCCATTTTCTATTCCAAAATCGTTCCAAAGCTCAAAACCTCTCTCTCTCACACCCTCCAACACTTTCCCCCTCTCGCCGGCAACGTGGTTTGGCCTCATGACTCCCCAAACCCCATCGTCCAATACACCCCAGGCGACGCCGTTTCAGTGCTGGTGGCTGAATCCGAAGCTGACTTCAACCACGTGCTTGATAACTCACCCCACGAAGCATCGGAGTCACGTTGTTTAGTACCCCACTTGGATTCATCGGATTCTCATGCCTCTATTGTCTCTCTTCAAATCACTCTGTTCCCCAACAAAGGATTCAGCATAGGAATCAGCACCCACCATTCCGTTCTTGATGGAAAATCTTCGACCCTTTTCATCAAGGCTTGGTCATCTCTATGCAAAACCAACGATGATGAATCTTCAGAGTCATCATCACCATCTTTGGCGCCAGAGTTGGTTCCTTTCTTTGACAGATCAGTCATCAAAACCCCAAGTGACTTGGGACTTAACTTGACAATCATTTGGACTGAGGTCTTAACCAAATTGTTCCCTACTGAAAACAGCGACGGGAGGTGCTTAAAGCTTGCACCTTTCCCTCCAAGACTCGAGGATCATGTTCGAGCTACGTTCGCGCTCACGAGAGCAGATTTGGAGAAGTTAAGGAAAAGGGTGTTGTCCAAATGGGACATTGTTGAAACAGGAGAAGAATCAGAGCCACCTAGGTTGTCGTCCTTTGTTCTCACATGTGCTTATGCGGTAGTTTGCATTGCGAAGGCCATTCATGGAGTTAAAAAGGAGAAAGAGAAGTTTTCTTTTGGGTTCACGGTGGATTGCAGGGCGAGGTTGGAGCCACCAATCCCTGACAACTATTTTGGTAACTGTGTATGGGGCCGTTTGGTGGATGCTGACCCACTGGACTTCATAAAGGAAGAAGCTTTTGTTATTATTGCAAAGAGTATTGATAGTAAAATAAAAGAGATGTCAGAAAAGGGGATTTTTCATGGGGCGGATAGTGTGTTTTCTAAACACGCGTCTTTGGCAAAAGAGAGAGTTGAAATCTTGGGAGTTGCAGGGTCAAATCGATTTGGGGTCTATGGGAGTGATTTTGGTTGGGGGAAGCCTGCTAAGGTGGAGATAACATCGGTGGATAGAGCCTTAACCATTGGGTTGGCAGAGAGCAAGGATGGGAATGGTGGTGTTGAAGTTGGGCTTGTTCTTAATAAACATGTCATGGATCTATTTGCCACTTTGTTTCGTCATGGAGTGTCAGATGAGTAG

Predicted protein sequences of Glyma18g50330

Limit To All Plant Sequences

>Glyma18g50330.1   sequence type=predicted peptide   gene model=Glyma18g50330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASQSHNIKIHDHFSVSPPSATATSLSLKFFDLFWLRFHPVERIFFYTLPTPQSDPSIFYSKIVPKLKTSLSHTLQHFPPLAGNVVWPHDSPNPIVQYTPGDAVSVLVAESEADFNHVLDNSPHEASESRCLVPHLDSSDSHASIVSLQITLFPNKGFSIGISTHHSVLDGKSSTLFIKAWSSLCKTNDDESSESSSPSLAPELVPFFDRSVIKTPSDLGLNLTIIWTEVLTKLFPTENSDGRCLKLAPFPPRLEDHVRATFALTRADLEKLRKRVLSKWDIVETGEESEPPRLSSFVLTCAYAVVCIAKAIHGVKKEKEKFSFGFTVDCRARLEPPIPDNYFGNCVWGRLVDADPLDFIKEEAFVIIAKSIDSKIKEMSEKGIFHGADSVFSKHASLAKERVEILGVAGSNRFGVYGSDFGWGKPAKVEITSVDRALTIGLAESKDGNGGVEVGLVLNKHVMDLFATLFRHGVSDE*

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