Glyma18g50320 - SoyBase

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Report for Sequence Feature Glyma18g50320

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59492593
stop:	59494295
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g50320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39050	AT	Annotation by Michelle Graham. TAIR10: HXXXD-type acyl-transferase family protein \| chr5:15634596-15636005 FORWARD LENGTH=469	SoyBase	E_val: 5.00E-103	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
GO:0050736	GO-mf	Annotation by Michelle Graham. GO Molecular Function: O-malonyltransferase activity	SoyBase	N/A	ISS
PF02458	PFAM	Transferase family	JGI		ISS
UniRef100_G7JQT5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isoflavonoid malonyl transferase n=2 Tax=Medicago truncatula RepID=G7JQT5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N4L2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4L2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g50320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g50320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g268200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g50320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g50320

Limit To All Plant Sequences

>Glyma18g50320.1   sequence type=CDS   gene model=Glyma18g50320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCACAACATCAAAATCCACGACCACTTAAGGGTTTCCCCTCCCTCAGCAACAGAAATATCCCTCTCTCTCACTTTCTTCGACCTGTTCTGGCTCAGGTTCCACCCCGTGGAACGCATCTTCTTCTACACCCTCCCTACACCCCATTCAAATCCATCCATTTTCTATTCCAAACTTGTTCCAAAGCTCAAAACATCTCTCTCTCGCACTCTCCAACACTTCCCCCCTCTCGCCGGCAACGTCGTTTGGCCTGATAACACCCCAAACCCCACCGTCCAATACACCCCAGGGGACTCCGTTTCACTTGTGGTTGCTGAATCCGAAGCTGATTTCAACCACGTGTTAGATAACTCACCTCACGAAGCATCAGAGTTACGTTGTTTAGTACCCCACTTGGATTCATCGGATTCTCATGCTTCTGTTGTCTCTTTCCAAATCACTCTGTTCCCTAACAGAGGCTTCAGCATAGGAATCAGCACCCACCATGCCGTCCTTGATGGAAAATCTTCAACTATTTTCGTCAAGGCTTGGGCTTCTCTATGCAAAACGTACAATGATGATGAGTCTTCAGAGTCATCATCACCATCTTTGGCTCCAGAGTTGAAGCCTTTCTTTGATAGAACAGCCATCAAAGACCCAAGTGAGATAGGACTTAACTTCACTGTCAATTGGACTGAGATCTTAACCAAATTTTTCCCCAATGAAAACAGCGACGGGAGATGCTTGAAGCTCCTACCTTTCCCTCCAAGACTCGAGGATCATGTTCGAGCCTCGTTCGCGCTCACAGGAGCAGATTTGGAGAAGCTAAGGAAAAGGGTGTTGTCCAAATGGGACATCGTTGATAGAGGAGCAGAATCAGAGCCACCTAGGTTGTCATCTTTCGTTCTCACATGTGCTTATGCGCTAGCTTGCATTGCTAAGGCCATTCATGGAGTTGAAAAGGAGAAAGAGAAATTTGCTTTTGCGTTCACAGTGGATTGCAGGGCGAGGTTGGAGCCTCCAATCCATGATAATTATTTTGGCAATTGTGTGTGGGGGCATGTGGTGGATGCTGAACCATTGGACTTCATAAAGGAAGAAGCTTTTGCTATTGTTGCAAAGAGTATTCATAGTAAAATAAAGATGATATTAGATGAGGGGATTTTTCATGGGATGGAGAGTGCGTTTTCTAGATATGAGTCTTTGGGAAAAGACGGAGTTGAAATCATGGGAATTGCAGGGTCTAACCGGTTTGGAGTTTATGGAACTGATTTTGGTTGGGGAAAGCCTGCTAAGGTGGAGATAGCATCGGTGGATAGAGCCTTAACCATTGGGTTTGCAGAGAGCAAGGATGGGAATGATGGTGTTCAAGTTGGGCTCGTGCTGAAGAAACATGTCATGGATCTCTTTTGTACTTTGTTTCGTCAAGGAATGTTAGATGATTGA

Predicted protein sequences of Glyma18g50320

Limit To All Plant Sequences

>Glyma18g50320.1   sequence type=predicted peptide   gene model=Glyma18g50320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASHNIKIHDHLRVSPPSATEISLSLTFFDLFWLRFHPVERIFFYTLPTPHSNPSIFYSKLVPKLKTSLSRTLQHFPPLAGNVVWPDNTPNPTVQYTPGDSVSLVVAESEADFNHVLDNSPHEASELRCLVPHLDSSDSHASVVSFQITLFPNRGFSIGISTHHAVLDGKSSTIFVKAWASLCKTYNDDESSESSSPSLAPELKPFFDRTAIKDPSEIGLNFTVNWTEILTKFFPNENSDGRCLKLLPFPPRLEDHVRASFALTGADLEKLRKRVLSKWDIVDRGAESEPPRLSSFVLTCAYALACIAKAIHGVEKEKEKFAFAFTVDCRARLEPPIHDNYFGNCVWGHVVDAEPLDFIKEEAFAIVAKSIHSKIKMILDEGIFHGMESAFSRYESLGKDGVEIMGIAGSNRFGVYGTDFGWGKPAKVEIASVDRALTIGFAESKDGNDGVQVGLVLKKHVMDLFCTLFRQGMLDD*

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