SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G35150 | AT | Annotation by Michelle Graham. TAIR10: O-methyltransferase family protein | chr4:16726948-16728531 REVERSE LENGTH=325 | SoyBase | E_val: 9.00E-54 | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| GO:0008171 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: O-methyltransferase activity | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| KOG3178 | KOG | Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases | JGI | ISS | |
| PTHR11746 | Panther | O-METHYLTRANSFERASE | JGI | ISS | |
| PF00891 | PFAM | O-methyltransferase | JGI | ISS | |
| PF08100 | PFAM | Dimerisation domain | JGI | ISS | |
| UniRef100_C6TAY1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Flavonoid 4'-O-methyltransferase n=1 Tax=Glycine max RepID=SOMT2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_C6TEX3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TEX3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g50280 not represented in the dataset |
Glyma18g50280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g267800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g50280.1 sequence type=CDS gene model=Glyma18g50280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTTCAATCAATGGCCGTAATGCAAGTGAGATCTTTCAAGGTCAAACTCTCTTGTACAAACACTTGTTTGCCCATGTAGATTCTAAGTGTCTCAAATGCATTGTTGAGCTTGGAATACCAGACATAATCCACAACCATGGCCAACCCATTACTCTTCCTGAGTTGGCGTCAATTCTACAAATTCCACCAGCTAAAGTTAGTCAAGTGCAAAGTCTCATGCGCTACCTGGCACACAATGGATTCTTTGAAAGAGTAACAATCCATGAAAAAGAAGCATATGCTCTCACTGCTGCTTCAGAGCTACTAGTCAAAAGCAGTGAGCTTAGTTTAGCTCCAATGGTTGAGTATATTCTTGACACAACTATTTCAGGTTCATTTCATCAGTTGAAGAAGTGGGTTCATGAGGAAGATCTCACACTATTTGAGATTTCCTTAGGATCACATTTGTGGGACTTTCTTAATAGAAACCCTGCATATAACAAGTCATTCAATGAGGCAATGGCTAGTGATTCTCAGATGTTGAACTTGGCGTTGAGAGATTGCAAGTTGGTGTTTGAGGGACTGGAATCCATTGTGGATGTTGGTGGTGGAACTGGAGCCACTGCCAAGATTATCTGTGAAGCATTTCCTGACTTGAAATGCATTGTGTTTGACCGTCCGCAGGTTGTGGAGAACTTGTCAGGAAGCAACAATTTGACATATGTTGGAGGGGACATGTTCAAATCTATTCCCAAGGCCTGTGCAGTTCTATTTAAGATGATTTTACATAATTGGAGTGACGAAGATTGCAGGAAGATATTAGAAAATTGTAAAGAAGCTATTTCGAGTAAAAGCAAAACAGGAAAAGTAATTGTCATAGATGTTGTGATAAACGAAAAGAAAGATGAGCATGAAATTACAAGACTAAAGCTTCTTATGGATCTAAACATGGCATGTCTTCTTAATGGAAAGGAAAGAAGAGAAGAAGATTGGAAGAAACTCTTCGTGGAAGCAGGGTTCCAAAGCTACAAAATATCTCCTTTGACAGGATATTTGTCTCTTATTGAGATCTATCCTTAG
>Glyma18g50280.1 sequence type=predicted peptide gene model=Glyma18g50280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSINGRNASEIFQGQTLLYKHLFAHVDSKCLKCIVELGIPDIIHNHGQPITLPELASILQIPPAKVSQVQSLMRYLAHNGFFERVTIHEKEAYALTAASELLVKSSELSLAPMVEYILDTTISGSFHQLKKWVHEEDLTLFEISLGSHLWDFLNRNPAYNKSFNEAMASDSQMLNLALRDCKLVFEGLESIVDVGGGTGATAKIICEAFPDLKCIVFDRPQVVENLSGSNNLTYVGGDMFKSIPKACAVLFKMILHNWSDEDCRKILENCKEAISSKSKTGKVIVIDVVINEKKDEHEITRLKLLMDLNMACLLNGKERREEDWKKLFVEAGFQSYKISPLTGYLSLIEIYP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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