Glyma18g50250 - SoyBase

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Report for Sequence Feature Glyma18g50250

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59442823
stop:	59449874
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g50250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60980	AT	Annotation by Michelle Graham. TAIR10: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain \| chr5:24543988-24546027 FORWARD LENGTH=460	SoyBase	E_val: 1.00E-92	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006913	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG0116	KOG	RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains	JGI		ISS
PTHR10693	Panther	RNA-BINDING RAS-GAP SH3 BINDING PROTEIN RELATED	JGI		ISS
PTHR10693:SF8	Panther	NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN /	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
PF02136	PFAM	Nuclear transport factor 2 (NTF2) domain	JGI		ISS
UniRef100_B9SNQ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ras-GTPase-activating protein-binding protein, putative n=1 Tax=Ricinus communis RepID=B9SNQ0_RICCO	SoyBase	E_val: 7.00E-163	ISS
UniRef100_UPI000233ECB2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233ECB2 related cluster n=1 Tax=unknown RepID=UPI000233ECB2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g50250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g50250

Paralog	Evidence	Comments
Glyma08g27040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g50250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g267400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g50250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g50250

Limit To All Plant Sequences

>Glyma18g50250.2   sequence type=CDS   gene model=Glyma18g50250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTGCAAACAGCTACTCCTCCAACTACTCCCAGTGCCCAAGTTGTTGGTAATGCATTTGTTGAGCAGTATTACCATATTCTTCACCATTCGCCGGATTTGGTCTATCGGTTTTACCAGGACTCTAGTGTGATAAGCCGTCCTGATTCCAGTGGTGTGATGACATCAGTTACGACCATGAAAGGCATTAATGAGAAGATTCTATCACTAAATTTCAAGGAATTTAAAGCAGAGATAAAGACTGCAGATGCTCAAAAATCATACAAGGAAGGAGTGACTGTTCTGGTGACTGGATGCTTGACTGGCAAGGATAACTTAAGAAGAAAATTTGCGCAGTCATTCTTTCTTGCTCCACAAGACAATGGCTATTTTGTTCTGAATGATGTTTTTAGGTATGTAGAAGACCATGAACCATCAGAACTGCCTCCAGTTACTGGAGATGGTGATGCAGCTGCTGTTACAGTAACACCAGAACCAGAACCCAGTCATTTTGCTGATTCTTCTGCACCAGACCCCACAAATTCTCATGTGAACAAAGGTCAAACTGTTGCTGAGAATGCTTATGAGCCATCTAATCACCATGAGAGACAGATACCTGTTGAGAATGTCGACAATGTAGAACCACATTTTCAGTCAAATGGTAATGATGATTCTCAGGCCACAGAATTGGCTTCTTCAGCTCAAGAGAAGAAGTCTTATGCATCTATTGTGAAAGTCCAAAAAGAGGGTTCAGTTGCAACTAAAGTCTATGTGCCTACTAATACACTAAAGTCAGGGCCTAACAAAACTGAGAACAAGGTAGTTGAGTCAGTAGAATCTACTGAAGTGTCTGAAGCAGCTTTGGATATTGAGGGGCACTCCATTTACATTCGAAATTTGCCTTTAAATGTGACGGCTGCTCAGTTGGAACTGGAGTTTAAGAAATTTGGGCCCATCAAGCCAGGAGGCATCCAAGTCAGAAATAATAAGCAGCAGGGATACTGCTTTGGCTTTGTTGAGTTCCTATCTCTAAATTCCATGAATAGTGCAATTCAGGCTTCGCCTGTTCCGATTGGGGGGCGTCAAGCTGTAGTTGAGATAAAGAGAACCACTACCCGGGGTAATTTGAAGTTAACTATTACAAATAAAATTGTTGTCATTCATTCAACAGAACAAAAAGAGAGAGAACCAACTGATTTTATATTAAGAGCTCCATGA

Predicted protein sequences of Glyma18g50250

Limit To All Plant Sequences

>Glyma18g50250.2   sequence type=predicted peptide   gene model=Glyma18g50250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALQTATPPTTPSAQVVGNAFVEQYYHILHHSPDLVYRFYQDSSVISRPDSSGVMTSVTTMKGINEKILSLNFKEFKAEIKTADAQKSYKEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFRYVEDHEPSELPPVTGDGDAAAVTVTPEPEPSHFADSSAPDPTNSHVNKGQTVAENAYEPSNHHERQIPVENVDNVEPHFQSNGNDDSQATELASSAQEKKSYASIVKVQKEGSVATKVYVPTNTLKSGPNKTENKVVESVESTEVSEAALDIEGHSIYIRNLPLNVTAAQLELEFKKFGPIKPGGIQVRNNKQQGYCFGFVEFLSLNSMNSAIQASPVPIGGRQAVVEIKRTTTRGNLKLTITNKIVVIHSTEQKEREPTDFILRAP*

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