Glyma18g50240 - SoyBase

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Report for Sequence Feature Glyma18g50240

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59433747
stop:	59438073
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g50240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G13740	AT	Annotation by Michelle Graham. TAIR10: ABI five binding protein 2 \| chr1:4713969-4715158 FORWARD LENGTH=348	SoyBase	E_val: 2.00E-62	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF07897	PFAM	Protein of unknown function (DUF1675)	JGI		ISS
UniRef100_B9RED1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RED1_RICCO	SoyBase	E_val: 4.00E-72	ISS
UniRef100_I1N4K4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N4K4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g50240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g50240

Paralog	Evidence	Comments
Glyma08g27010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g50240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g267200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g50240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g50240

Limit To All Plant Sequences

>Glyma18g50240.1   sequence type=CDS   gene model=Glyma18g50240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAAGTTGAAGACATAGACAACCCTCATCACGACCACCATCATTACCTTTCTTCTTCTACAACACAACCTCCAATGATCAATTTCCCGCGAGATCTGTTAAGAACCTTCGTGGGAGTGAACAATAATAACAATAACAACAGTCAGCACCACAATTTGCCTATGCCAGTGGTGAAGTTAGAGGATGAGAAAGAAGAGCTGGAACTAAGTCTCGGCCTTTCGATGAATGGTAGATTTGGGGTGGACCCTACAGCGAAGAAGATAAAGAGAACAACCTCGATACCGGAGTTTGTGCGCGACGAGGAGATGGGATATGCTGCTGCGATGGGGTGCACGGGGTCTCTGGTGAGGACGTGTTCGCTTCCGACGGAGACGGAGGAGGAGTGGCGGAAGAGGAAGGAGTTGCAGACGCTGCGGCGGGTGGAGGCACGGAGGAAGCGCTCCGAGAAGCAGAGGAACATGAAAGCCTTGAGAGAACAACAACAGAGGTCCGAAGGGAGCAATCCGGTGGAGCAAGGTGCAGGGGGGTACGGTGAGGTTGCACCACCCTTGGCGAGGACCGTGTCGTTGACCGCACGTGTTTGTGGACTCGGCTTGAATGGGGACAGTGAAAAGGAGAAGAAGGAGAAGAGAAGTGGAATAGCGTTGCCACCTCCCTCGCCTTCACAGGGTTCCATTGGTTCTTCCGGAATTTCAGAAGCTGAGTCTCAACAGGGTCAAGGAACAACACCTATGGATGTTAGAAGCCCTACTAGTGCTAACTTGTTGCCAGACAGCGAACTGAAATCACCAGCAGGTGTTGCTGAGAACAACACAGGCAAGAATGCTGCTGCTGCTGCTGCAGTAACAATGAGAAGTCAATCTAACAAATATTCACCACCACAAAGCAGAACCAAAGACATTGTGAGGAACTTGTTGGAAGACATGCCCTGTGTCTCCACCAAAGGAGATGGCCCTAATGGGAAAAGAATAGAAGGCTTTCTTTACCGGTATGGGAAAGGTGAGGAAGTGAGGATAGTATGCGTTTGCCATGGCAGTTTCCTCACCCCTTCCGAGTTTGTTAAGCACGCCGGTGGCGGTGACGTGGCAAATCCATTGAAGCATATTGTTGTTAGTCCAAGCTTTTTGTGA

Predicted protein sequences of Glyma18g50240

Limit To All Plant Sequences

>Glyma18g50240.1   sequence type=predicted peptide   gene model=Glyma18g50240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEVEDIDNPHHDHHHYLSSSTTQPPMINFPRDLLRTFVGVNNNNNNNSQHHNLPMPVVKLEDEKEELELSLGLSMNGRFGVDPTAKKIKRTTSIPEFVRDEEMGYAAAMGCTGSLVRTCSLPTETEEEWRKRKELQTLRRVEARRKRSEKQRNMKALREQQQRSEGSNPVEQGAGGYGEVAPPLARTVSLTARVCGLGLNGDSEKEKKEKRSGIALPPPSPSQGSIGSSGISEAESQQGQGTTPMDVRSPTSANLLPDSELKSPAGVAENNTGKNAAAAAAVTMRSQSNKYSPPQSRTKDIVRNLLEDMPCVSTKGDGPNGKRIEGFLYRYGKGEEVRIVCVCHGSFLTPSEFVKHAGGGDVANPLKHIVVSPSFL*

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