SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G15870 | AT | Annotation by Michelle Graham. TAIR10: glycosyl hydrolase family 81 protein | chr5:5182641-5184878 REVERSE LENGTH=745 | SoyBase | E_val: 0 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0016998 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule catabolic process | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0016798 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on glycosyl bonds | SoyBase | N/A | ISS |
| KOG2254 | KOG | Predicted endo-1,3-beta-glucanase | JGI | ISS | |
| PF03639 | PFAM | Glycosyl hydrolase family 81 | JGI | ISS | |
| UniRef100_G7L591 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Endo-1,3(4)-beta-glucanase n=1 Tax=Medicago truncatula RepID=G7L591_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N4K1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4K1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g50180 not represented in the dataset |
Glyma18g50180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g26935 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g266900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g50180.1 sequence type=CDS gene model=Glyma18g50180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTTCTAATTTTCTCTTCCCTCAAACTCAATCCACAGTCCTCCCAAACCCTTCAACCTACTTCTCCTCAAACCTTCTTTCTTCTCCACTCCCCACTAACTCTTTCTTTCAAAACTTTGTTATTCCAAACGGGTCCCAAGCTGAGTACATTCACCCTTACCTCGTCAAAACCTCAAACTCTTCACTCTCAGCCTCATACCCTCTTCTCCTCTTCACCACAGCACTTTTGTACCAATCTTTTGTGCCAGATATCACAATCTCTTCCACTCAAACACACTCAAATCAACAAAACCGTGAAATCTCATCATACAGTGACCTCAGTGTCACTTTGGACATTCCCTCCTCCAACCTAAGGTTCTTTCTCTCAAGAGGAAGCCCTTTTATAACCGCTTCTGTGACATCTCCAACATCTCTTTCGATCACAACAGTCCACACCATAGTCTCTTTGTCTTCCAATGACGACAACAACACCAAGTACACCCTTAAGCTTAACAACACTCAAATATGGCTCATATACACCTCCTCCCCAATCTATTTGAATCATGATGGCGCTTCCAATATTACATCCAAGCCATTTTCTGGCATAATTCGTGTAGCAGCGCTGCCTGATTCCAACTCCAAGAGTGTAGCAATTCTCGACAAGTTCAGCTCTTGTTACCCTTTGTCGGGAAATGCAACACTCGTGGAACCTTTCCGTGTGGTGTATCAATGGCAAAAGGAAAGTTCTGGGGACTTGCTCATGCTAGCTCACCCTCTTCATGTTAAGCTTTTATCAAATAGTCAAGTTACTGTGCTGAAAGATTTTAAGTATAGAAGCATTGATGGCGATCTTGTTGGTGTTGTTGGAGATTCATGGGTGTTGGAAACGGATCCTATTCCTGTGACATGGTATTCTAACAAAGGTGTGGATAAAGATTCGTATGATGAGGTTGTCTCGGCACTTGTTAAGGATGTGCAAGAGCTAAATTCTTCAGCAATAGGAACCAGTTCATCATATTTTTATGGGAAGCGTGTTGGAAGGGCTGCAAGGTTGGCGTTGATAGCGGAAGAAGTGTCTTTTTCCAACGTGGTTCCCACGATTAAGAAGTTTCTGAAGGAGTCTATTGAGCCTTGGTTGGATGGAACTTTTCAAGGGAATAGTTTTCTATATGAAAATAAATGGGGTGGACTTGTCACCAAACAAGGCTCTACAGATTCAACTGCTGACTTTGGGTTTGGAGTGTACAATGATCACCATTATCATTTAGGGTACTTTCTTTATGGAATTGCGGTTCTTGCAAAGATTGATCCTCAGTGGGGACAAAAATACAAGCCACAAGTTTATTCACTTGTCACAGATTTCATGAACTTGGGCCAGAGATATAACAGATTTTATCCACGTCTAAGGTGTTTTGATCTTTACAAATTGCACTCTTGGGCTGCAGGGTTGACCGAGTTTGAGGATGGAAGGAATCAAGAAAGTACAAGTGAGGCTGTGAATGCATACTATTCAGCAGCATTGGTGGGTCTTGCATATGGTGACTCAAGTCTTGTTGACACTGGGTCAACGCTAGTGGCATTGGAAATTCTAGCCGCACAAACTTGGTGGCATGTGAAAGTGGAAGACAACTTGTATGAAGAGGAATTTGCTAAAGATAACAAGATAGTGGGGGTTTTGTGGGCTAACAAGAGGGATAGTAAGCTATGGTGGGCCAGTGCTGAGTGTAGGGAGTGTAGGCTTGGCATCCAAGTGCTACCCTTATTGCCTATTACTGAGACATTGTTCTCTGATGCTGATTATGTGAAGGAGCTAGTGGAATGGACAGTGCCCTTTTTAAGTAGTCAAGGGTGGAAGGGGATGACCTATGCCCTGCAAGGAATTTATGATAAAGAAACAGCATTGGAAAATATAAGAAAGTTGAAAGGTTTTGATGATGGGAACTCTTTGAGTAATCTCTTGTGGTGGATTCACAGCAGATGA
>Glyma18g50180.1 sequence type=predicted peptide gene model=Glyma18g50180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSNFLFPQTQSTVLPNPSTYFSSNLLSSPLPTNSFFQNFVIPNGSQAEYIHPYLVKTSNSSLSASYPLLLFTTALLYQSFVPDITISSTQTHSNQQNREISSYSDLSVTLDIPSSNLRFFLSRGSPFITASVTSPTSLSITTVHTIVSLSSNDDNNTKYTLKLNNTQIWLIYTSSPIYLNHDGASNITSKPFSGIIRVAALPDSNSKSVAILDKFSSCYPLSGNATLVEPFRVVYQWQKESSGDLLMLAHPLHVKLLSNSQVTVLKDFKYRSIDGDLVGVVGDSWVLETDPIPVTWYSNKGVDKDSYDEVVSALVKDVQELNSSAIGTSSSYFYGKRVGRAARLALIAEEVSFSNVVPTIKKFLKESIEPWLDGTFQGNSFLYENKWGGLVTKQGSTDSTADFGFGVYNDHHYHLGYFLYGIAVLAKIDPQWGQKYKPQVYSLVTDFMNLGQRYNRFYPRLRCFDLYKLHSWAAGLTEFEDGRNQESTSEAVNAYYSAALVGLAYGDSSLVDTGSTLVALEILAAQTWWHVKVEDNLYEEEFAKDNKIVGVLWANKRDSKLWWASAECRECRLGIQVLPLLPITETLFSDADYVKELVEWTVPFLSSQGWKGMTYALQGIYDKETALENIRKLKGFDDGNSLSNLLWWIHSR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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