Glyma18g50170 - SoyBase

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Report for Sequence Feature Glyma18g50170

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59377234
stop:	59384405
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g50170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02110	AT	Annotation by Michelle Graham. TAIR10: serine carboxypeptidase-like 25 \| chr3:370902-373637 REVERSE LENGTH=473	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004185	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity	SoyBase	N/A	ISS
KOG1282	KOG	Serine carboxypeptidases (lysosomal cathepsin A)	JGI		ISS
PTHR11802	Panther	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	JGI		ISS
PTHR11802:SF8	Panther	SERINE CARBOXYPEPTIDASE II (CARBOXYPEPTIDASE D) (PLANTS)	JGI		ISS
PF00450	PFAM	Serine carboxypeptidase	JGI		ISS
UniRef100_Q8L9Y0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine carboxypeptidase-like 25 n=1 Tax=Arabidopsis thaliana RepID=SCP25_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EB4C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EB4C related cluster n=1 Tax=unknown RepID=UPI000233EB4C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g50170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g50170

Paralog	Evidence	Comments
Glyma08g26930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g50170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g266700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g50170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g50170

Limit To All Plant Sequences

>Glyma18g50170.1   sequence type=CDS   gene model=Glyma18g50170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAAAGACAGATCTTTGCTCATGTGGTGATTTTGTTGCTTATGGTCTTAGTTGGAGCCAGGTTTGCTAAAGCAGAAGGAGGAGGAGAAGCTGCTGATAGGATTTTGGAACTCCCTGGTCAGCCAAAAGTGTCATTTCAGCAGTTTTCTGGCTATGTTACTGTTAACAAGGTTGCTGGTAGAGCTCTCTTTTACTGGCTCACTGAAGCTGCCCAAAATCCTCTCACCAAACCTTTGGTCATTTGGCTCAATGGAGGTCCAGGATGTTCATCAGTGGCATATGGAGCATCTGAAGAGATTGGCCCATTTAGAATAAACAAAACAGCTTCTGGGCTATACATTAACAAGTTTTCGTGGAACACAGTGGCCAACCTATTGTTCTTGGAAGCTCCGGCCGGCGTAGGCTTCTCCTACGCCAACCGCTCCTCTGACCTCCTCAACACCGGTGACCGCCGCACCGCTCAAGATTCTCTGGAATTTGTTATACAATGGCTAGAAAGATTCCCTCGTTACAAAAACCGGGAACTTTATATCACTGGAGAGAGCTATGCAGGCCATTATGTTCCTCAATTAGCCAAGGAAATCTTGACCTACAACGCAAAAACCAAGCACCCCATCAATCTCAAAGGAATCATGGTAGGAAATGCAGTGACAGACAACTACTATGATAACTTGGGCACAGTGACGTATTGGTGGAGCCATGCTATGATCTCCGACCAGACTTACCGGCAACTAATGAGTACATGTGATTTTCACAGGCAGAAGGAATCTGATGAGTGTGAGTCTGTGTATAGCTATGCCATGGATCAAGAGTTTGGTAATATTGATCAGTACAACATCTATGCTCCTCCATGCAACAACTCTGATGGTAGTAGTAGCTCTGCCAACCGCCGCACCATGCGTTTACCTCACCGACCCCATGTGGATTTTAGTCATTGGTCTGGTTATGATCCATGTACGGAAAAGTATGCAGAGATTTACTACAACAGGCCTGATGTTCAGAAAGCACTCCATGCCAACAAAACCGGTATTCCTTATAGGTGGACTGCTTGCAGCGAGGTTTTGAATCGGAACTGGAATGATACTGATGTATCTGTTCTTCCAATTTATAGAGAATTGATAGCTCACGGAATAAGAGTTTGGGTGTTCAGTGGGGACGTGGACTCAGTGGTGCCTGTCACAGCAACAAGATATGCCCTTGCCCAGCTTAAGTTGTCAACTAAAATACCATGGTATCCTTGGTATGTCAAAAATCAGGTTGGAGGGTGGACAGAGGTGTACGAAGGGGTAACATTCGCGACAGTGAGAGGAGCAGGGCATGAAGTGCCACTATTCAAGCCAAGAGCAGCACTTCAGTTATTCAAATCATTCCTTGAAGGAAAGCCTCTTCCAAAGTCCTAG

Predicted protein sequences of Glyma18g50170

Limit To All Plant Sequences

>Glyma18g50170.1   sequence type=predicted peptide   gene model=Glyma18g50170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQRQIFAHVVILLLMVLVGARFAKAEGGGEAADRILELPGQPKVSFQQFSGYVTVNKVAGRALFYWLTEAAQNPLTKPLVIWLNGGPGCSSVAYGASEEIGPFRINKTASGLYINKFSWNTVANLLFLEAPAGVGFSYANRSSDLLNTGDRRTAQDSLEFVIQWLERFPRYKNRELYITGESYAGHYVPQLAKEILTYNAKTKHPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYRQLMSTCDFHRQKESDECESVYSYAMDQEFGNIDQYNIYAPPCNNSDGSSSSANRRTMRLPHRPHVDFSHWSGYDPCTEKYAEIYYNRPDVQKALHANKTGIPYRWTACSEVLNRNWNDTDVSVLPIYRELIAHGIRVWVFSGDVDSVVPVTATRYALAQLKLSTKIPWYPWYVKNQVGGWTEVYEGVTFATVRGAGHEVPLFKPRAALQLFKSFLEGKPLPKS*

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