Report for Sequence Feature Glyma18g50160
Feature Type: gene_model
Chromosome: Gm18
Start: 59368000
stop: 59370999
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g50160
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G29400 AT
Annotation by Michelle Graham. TAIR10: exocyst subunit exo70 family protein E1 | chr3:11297339-11299315 REVERSE LENGTH=658
SoyBase E_val: 0 ISS
GO:0002237 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin
SoyBase N/A ISS
GO:0006887 GO-bp
Annotation by Michelle Graham. GO Biological Process: exocytosis
SoyBase N/A ISS
GO:0006904 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis
SoyBase N/A ISS
GO:0000145 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: exocyst
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
KOG2344
KOG
Exocyst component protein and related proteins
JGI ISS
PTHR12542 Panther
EXOCYST COMPLEX PROTEIN EXO70-RELATED
JGI ISS
PTHR12542:SF7 Panther
EXOCYST COMPLEX PROTEIN EXO70
JGI ISS
PF03081 PFAM
Exo70 exocyst complex subunit
JGI ISS
UniRef100_B9SNP4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SNP4_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1N4J9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4J9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g50160
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g50160
Paralog Evidence Comments
Glyma08g26920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g50160 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g266600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g50160
Coding sequences of Glyma18g50160
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g50160.1 sequence type=CDS gene model=Glyma18g50160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGTAGAGGAGTCCGAGCCTGTGATTGGGGAGCTGGAAAGGGAGGAGAATTTGATTGCTGCAGTTAGGCATATTGTGAAGGCATTGGGGCCAAATAAGACCCTTACTAGTGATGCCAAGAAAATTCTGGCAGATCTTGGCACTAGATTGTCCTCCATGTCCATACGTAGTGAGAAGGATGAGGGGAAACAAGGGCAGGGGGAGGATGGTGGTGATGATCATGATGGCAGTGATGATCTTCATGATGATTATGATGATGATGAGGGTGTTAGTGCTATTGAAGAAAGGCTTAATGTGATTCAGGAGAAGATTATGAGATGGGAGGAAGATCAGTCCATGATTTGGGATTTAGGGCCTATGGAAGCATCTGAGTATCTTAATGCTGCTAATGAAGCCCGCCGGTTGATTGAGAAGTTGGAAAGTTTGCATTTGAAGAAAGAGGATCAAGAGTACAAGTGTATGCAGAGGGCTTATAGTGTTCTTCAAACAGCTATGGCGCGGCTTGAAGAAGAATTCAGGAACTTGCTTATCCAGAACAGGCAACGTTTTGAGCCTGAGTATGTCTCTTTTCGCTCCAATGAGGAAGATGCTGCTGATGAGAACTCCATAGTCTCTTTAGGTGACGAATTAGTTGAGGAATCACTTCAAAGAGATAGTGTCAGCAGAGCTTATGAGGAGCATATCATTGATTTGGTTCATCCAGCCGTGATCCCGGATCTCAGGTGTATTGCAAACTTGCTTTTTGCTTCTAATTATGTCCAGGAATGTTCTAATGCTTATATAATTGTCCGGAGGGATGCCTTAGATGAGTGCCTCTTCATTCTTGAAATGGAAAGGCTAAGCATCGAGGATGTCTTGAAAATGGAGTGGGGTACTCTGAATTCAAAAATCAAAAGATGGATTTGGGCTGTGAAAATTTTTGTTAGGGTGTATCTTGCAAGTGAGAGGTGGCTTAGTGACCAGATTTTTGGGGAGGGTGAGCCTGTTGGTCTATCTTGTTTTGTTGATGCATCTAAGGCTTCGATGTTGCAGCTTCTGAATTTCGGTGAAGCCATGTCCATTGGCCCTCACCAACCCGAGAAATTGTTCCGCGTTCTTGACATATATGAGGTTCTACAAGACCTTATGCCAGACATTGATGCTTTGTATTCAGATGAGGTTGGTTCCTCAGTAAAAATTGAATGTCATGAGGTTCTGAAGAGATTAGGCGATTGTGTGAGGGTGACATTTCTTGAATTTGAAAATGCCATTGCAACAAATGTATCATCAACTCCTTTTGTAGGTGGTGGGATACATCCTTTGACCAAATATGTTATGAATTATCTTAGAGCCCTTACCGACTACAGTGACATACTCAATCTGCTTTTGAAGGACCAAGATGAGGATGCCATTTCGCTGTCACCTGACATGAGCCCTGGTACAGAAGAAGATAACAGAAGCCAGGGATCTCCAAGTAGAGTTTCCTCAATGGCCCTCCACTTCCGATCAATTGCTTCAATCTTGGAAAGCAACCTTGAGGAGAAGTCCAAGTTATACAAAGAAGTCTCCTTGCAGCACTTGTTCTTAATGAACAACCTGCATTATATGGCTGAAAAGGTTAAGGGGTCTGAACTCAGGCTCGTACATGGAGATGAATGGATTCGAAAGCACAACTGGAAGTTTCAGCAGCATGCAATGAAATATGAGAGAGCTAGTTGGAGTTCCATTCTCAACTTGCTTAAGGATGAGGGAGTTTTTGTTCCGGGTATAACTTCGGTCTCAAAAAGTCTTGTTAAAGAGAGGCTGCGAAGCTTCTACCTTGGCTTTGAGGATGTTTACAGGATCCAGACAGCTTGGATTATCCCTGATTTTCAGCTTCGTGAAGATTTGCGGATTTCTATATCTGTCAAAGTAATCCAAGCTTATAGGTCGTTTGTTGGAAGGTTCAGTTCGTACACAAGTGACAAAATCATTAAGTACAGTCCTGATGATTTAGAAAACTACCTTTTGGATTTCTTTGAAGGATCTCAAAAGTTGTTGCAAAATCCTCATAGGAGGTGA
Predicted protein sequences of Glyma18g50160
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g50160.1 sequence type=predicted peptide gene model=Glyma18g50160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAVEESEPVIGELEREENLIAAVRHIVKALGPNKTLTSDAKKILADLGTRLSSMSIRSEKDEGKQGQGEDGGDDHDGSDDLHDDYDDDEGVSAIEERLNVIQEKIMRWEEDQSMIWDLGPMEASEYLNAANEARRLIEKLESLHLKKEDQEYKCMQRAYSVLQTAMARLEEEFRNLLIQNRQRFEPEYVSFRSNEEDAADENSIVSLGDELVEESLQRDSVSRAYEEHIIDLVHPAVIPDLRCIANLLFASNYVQECSNAYIIVRRDALDECLFILEMERLSIEDVLKMEWGTLNSKIKRWIWAVKIFVRVYLASERWLSDQIFGEGEPVGLSCFVDASKASMLQLLNFGEAMSIGPHQPEKLFRVLDIYEVLQDLMPDIDALYSDEVGSSVKIECHEVLKRLGDCVRVTFLEFENAIATNVSSTPFVGGGIHPLTKYVMNYLRALTDYSDILNLLLKDQDEDAISLSPDMSPGTEEDNRSQGSPSRVSSMALHFRSIASILESNLEEKSKLYKEVSLQHLFLMNNLHYMAEKVKGSELRLVHGDEWIRKHNWKFQQHAMKYERASWSSILNLLKDEGVFVPGITSVSKSLVKERLRSFYLGFEDVYRIQTAWIIPDFQLREDLRISISVKVIQAYRSFVGRFSSYTSDKIIKYSPDDLENYLLDFFEGSQKLLQNPHRR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
