Glyma18g50140 - SoyBase

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Report for Sequence Feature Glyma18g50140

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59348389
stop:	59358179
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g50140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G29390	AT	Annotation by Michelle Graham. TAIR10: RS2-interacting KH protein \| chr3:11289675-11294524 FORWARD LENGTH=578	SoyBase	E_val: 9.00E-154	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG1960	KOG	Predicted RNA-binding protein, contains KH domains	JGI		ISS
PTHR15744	Panther	BLOM7	JGI		ISS
UniRef100_Q9LIA4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein RIK n=2 Tax=Arabidopsis thaliana RepID=RIK_ARATH	SoyBase	E_val: 4.00E-151	ISS
UniRef100_UPI000233EB4A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EB4A related cluster n=1 Tax=unknown RepID=UPI000233EB4A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g50140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g50140

Paralog	Evidence	Comments
Glyma08g26890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g50140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g266400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g50140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g50140

Limit To All Plant Sequences

>Glyma18g50140.2   sequence type=transcript   gene model=Glyma18g50140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCAAACCCCGTCGATATCGTTTAATCCATGCATTGTGTCGTTTAACCCATCTGGCGTCACGCAACTGTACGACGTTAGGCGGTAGGCACAAAACCCCGTTTCACACTTTGACCGACCAATCGCGTTCGTTCCAACCCAACACCGACGCTCGCGTGAATCCTTTTTCGTTTTCGGGTATCGAAAACGAAGAAGCAAAGAGAACCAAAGCGCCACGCAATTGCACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTGGCAACTCAGAATCGCTTAAACAATGACAGAGGATAGCATCGTTAGGGTTTCTTCTTCCAACGAAACCTCCGCGGCCAACGAGGCTTCGCAGACGCGGCAGAGAAAGAAGAGAAAGTGGGATCAACCGGCGGAGTCATTGATGCCAGTTGGGATGACAGTCCCTGGAGCACTCCCTTTGAGCAATGCCGTGACTCTTGGAGGGGTTGCATTTCCCGCCATGGCTCCGGTGATCTCCGGCACTCTTTTGACAAATCCTCTGGCAGCTTCTGCTCAGCTTCCGCAACATGCAGCTGCAGCTGCTGTTGCCGCGCAAAAGTTGAATCAACATAAGATCCAAGATGAATTAATAATTGCTCGAGAAATTGTCATAAATGATGCAGAGTCTTCTGTTCGCTACAAGTTGACAAAACGCCAAACACAAGAGGAGATCCAGAGGTGCACTGGTGCCATAGTTATAACTAGGGGAAAGTATCGGCTGCCTAATGCACCACATGATGGAGAGAAGCCACTGTACCTTCACATCTCTGCAGGAGCTCATATAAAAGAGACAGCAGAACGGATTTTAGCTGTTGATCGTGCTGCTGCAATGATTGAAGAAATTCTCAAACAGGTGCAAAATTCACAGTCAATTTCTTCCGTCACACCTTCCGCTTTGGTTAATGGAGTGAAGATGCTGAGTACATGCGTGTTTTTGGGCTTTGATGCTGATCCTTCATTGAACATTGTTGCTCGTATACGTGGACCAAATGATCAGTATATAAATCACATTATGAATGAAACAGGAGCGACAGTTGTACTGAGAGGACGTGGTTCAGGAAACAATGAATGCTTGAATGGAGAAGATGGACAGCAGCCCCTGCATCTGTTTTTGTCTAGTAACAATGCGAAAAGTCTTGAAGATGCTAAGCTTTTGGCTGAAAATCTTTTGGATACAATCTGTACGGAGTGTGGTGCTTCAAGGGTTTCATCATGTAAGGTTTATAGTGCTGTTCCACCTCCACAGCAGGCATACACTGCTGTTCCACCTCCCCAGCAGGTATATAGCGCTGTTCCACCACCCCAGCAGGTTTATAGTGGCCCTTCTTTGTTGAAGCAGATTCCTGCTGCCATTTCACCCCCACAAGTTTATAGTGCTGTTCCACCCCCACAGCAGTTGTTGACTGGAGTTCAGAGTTCTGGAATTGACCTAGAGGCAGGTGCCAGCCTAATCACTAGTTCAATGTCAGCAGCTGGGGTCTTGACACCGGTTCCTCCAGCTTCCTTGGTTGGAGTGACTGGTGTCACTGGTGCCCTCACTTTGGGGACTACACCCCAATCTATAAGACATTTAAGCTCTGGGCCTCAAGCAAACATGACTGGTTATACTCCTCCCCCTTTAGTATCAGGTGGTACTAGCTATATTGGATATGGCGGATTATATCCTCAAGCTACCCCTTTGCAACAAGTTGCCCTTGCCTTGAGACACTCACCTCCTGTTGCATCAACAGTTGCTCCCACAACATCAGCATCAAACAGAGGATCCAAGTCAACCTTAAGCTCTGATCTTGAAAAGGAGAAACGGCCGCCTCAGAGACGAAAGTTTCAAGAATTGCCAGTTGGTTCAAAAGACACAACAAAACTCAATCAGGTATTTTCTCTGACCTTCTATGAAGCAAAAAGCCTGACACTGGACCTGTCTGTTGGGCCATTGGTTTGTATGTTTGACAGGGTTTTCAGTTTTGGAGGAGTAGTAGGGTGCTTGTGGCTTCACAGCATATGCCCTTTCCAATCCAAGATGTTATTCTAATATTTTCCTTCATTGGTAAAATTGCTGCAAAAGATGTTGTGGCATGCTTTTCAGCCATGCCCTCCTCTAGTCCTGCATATATGGACTGTCAATTTCCTGAAGAAAAGGGTTTACCATACCAGCACCAAATTGATGCCAATCCTTTAAATTGAAATAAAGACAAGTTAGAGATAGGAGAAAATATAAAACTAAGGAATGAGATATCATAGCAAGGTATAATAAAAAAGGAATAAAATAAAAATTGTATGTATGGACAAAGTAAATTAAAAAAGCTCTTTCCCATGATTGGTTATCCTTTGAAGAGACACTCTTAGAACATCTTACACCACCATGAAGTCTTGCTAGACATAATCCCAAGTCCTTTGAAATGATTCATAAAGAGAAAGAGATGAAAACTTGCATCTTTTGTGCTACCAATCAATCCATTCCTGACCAAAAAATTGAGTTTCAAGTGTCACTATTAAACCCATTGATCACTAAAATATCCAGTTGTGTGCAAGATTTTTTTTCTTCTTATTTTACATCAATGCTGCATTCGGTATTGGGTCTCAAACCCTATTATCAGGAAAATTTGAGCTGCAGATTTACATTTATCTTTACATTATCTATTGGGAGCTTGACAATATATTCCTATGCACATATCTTAATGTATTATCTATCCGTTTACTCCATCTGGCTAGTTTTTTTTACTTTCCTGGTTTTTATTATCATGTATGTAACAGTATAGTAGATCATTCTAGAATGATACACTACTAACAAGTCACTGCCCGTTTATCCCCTTGTTTGTTTTACCTCGTTTTTTGTATTCGTTTTTCTCGTTTGTAGTTCAGTGTTAATTTGACTTTGTAGTTTGGCATGTTGAAACAATTAATGAAGTATCTGATTCAAAAGTTGTGTTTGGGTTTTTGTTTTCTCCCACTCTAACTCAATTGCAGAGATTGCAACCTCTAAAAACTAATGAACAATCTGATGGTCCGGTTGTGAGGAATATATCAACAATGCCTGCCCCTAAGAAGTTGGTTCAGCCATCATCCAATGGAATGCCACCACCTCTACTAAGAACCATGCCCCCACCACCACCTCCACCTAAATTTTGTGGTCCATCTGAAGTTAAAGTACAGGCCAAGAACAAGACTTTGCTTAAGACAAAATCTGATGCAGTTCCTGATACTTTGGTCAAGCTAATGGAATATGGAGAGGAGGATGATGATGATATTGATTCTAGTGAGGAATCACTTCCTCATGACGCCGGAGCAACTGGGGTTCAAAAGCCTTTCTGGGCTTTATGAGCTACAAGGTGCATATTGGACTATATATGTAAATATTTATTGTTTGGGTTGGGACTAGTTCTTGCTGGTTACATACTCTTCTTCCCGGGGTGGAAAGGGAAGCCCTTAGCATGATTTTTGGAGCCAAATAATTTGGTTGAGTAGCACTTTAAAGGTTTTAGTTGCCCATTCTCATATGCTTCGTAAGAGAGGTTTATATGTTGTAATTTTTTGGCCCTATTTGAGTAAGCATGTACCGGTAGTCTCTTTTTAGTGGTTTAGTAGGCCACTAAAGTAACGATGCTGTGATAAGGGACAGTTTTTTCCTTCTTCCCCCCATTGTTAATTATTCATCCTGGCTGAATGAAACGAAGCTACCAGGTTAGATGGAACAAGCAATTGCAAAAGCGCACACAAACACACACACATTATTATTTTTCCATGGGTTATCATCTTCACACACATCTGCACCCGGTTCAATGATTTAAAAACACAAGTTGTATTGGATGTGATATAAATTGCTCAAAATTGTGTATAATATAAATTAAATCA

Coding sequences of Glyma18g50140

Limit To All Plant Sequences

>Glyma18g50140.1   sequence type=CDS   gene model=Glyma18g50140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGAGGATAGCATCGTTAGGGTTTCTTCTTCCAACGAAACCTCCGCGGCCAACGAGGCTTCGCAGACGCGGCAGAGAAAGAAGAGAAAGTGGGATCAACCGGCGGAGTCATTGATGCCAGTTGGGATGACAGTCCCTGGAGCACTCCCTTTGAGCAATGCCGTGACTCTTGGAGGGGTTGCATTTCCCGCCATGGCTCCGGTGATCTCCGGCACTCTTTTGACAAATCCTCTGGCAGCTTCTGCTCAGCTTCCGCAACATGCAGCTGCAGCTGCTGTTGCCGCGCAAAAGTTGAATCAACATAAGATCCAAGATGAATTAATAATTGCTCGAGAAATTGTCATAAATGATGCAGAGTCTTCTGTTCGCTACAAGTTGACAAAACGCCAAACACAAGAGGAGATCCAGAGGTGCACTGGTGCCATAGTTATAACTAGGGGAAAGTATCGGCTGCCTAATGCACCACATGATGGAGAGAAGCCACTGTACCTTCACATCTCTGCAGGAGCTCATATAAAAGAGACAGCAGAACGGATTTTAGCTGTTGATCGTGCTGCTGCAATGATTGAAGAAATTCTCAAACAGGTGCAAAATTCACAGTCAATTTCTTCCGTCACACCTTCCGCTTTGGTTAATGGAGTGAAGATGCTGAGTACATGCGTGTTTTTGGGCTTTGATGCTGATCCTTCATTGAACATTGTTGCTCGTATACGTGGACCAAATGATCAGTATATAAATCACATTATGAATGAAACAGGAGCGACAGTTGTACTGAGAGGACGTGGTTCAGGAAACAATGAATGCTTGAATGGAGAAGATGGACAGCAGCCCCTGCATCTGTTTTTGTCTAGTAACAATGCGAAAAGTCTTGAAGATGCTAAGCTTTTGGCTGAAAATCTTTTGGATACAATCTGTACGGAGTGTGGTGCTTCAAGGGTTTCATCATGTAAGGTTTATAGTGCTGTTCCACCTCCACAGCAGGCATACACTGCTGTTCCACCTCCCCAGCAGGTATATAGCGCTGTTCCACCACCCCAGCAGGTTTATAGTGGCCCTTCTTTGTTGAAGCAGATTCCTGCTGCCATTTCACCCCCACAAGTTTATAGTGCTGTTCCACCCCCACAGCAGTTGTTGACTGGAGTTCAGAGTTCTGGAATTGACCTAGAGGCAGGTGCCAGCCTAATCACTAGTTCAATGTCAGCAGCTGGGGTCTTGACACCGGTTCCTCCAGCTTCCTTGGTTGGAGTGACTGGTGTCACTGGTGCCCTCACTTTGGGGACTACACCCCAATCTATAAGACATTTAAGCTCTGGGCCTCAAGCAAACATGACTGGTTATACTCCTCCCCCTTTAGTATCAGGTGGTACTAGCTATATTGGATATGGCGGATTATATCCTCAAGCTACCCCTTTGCAACAAGTTGCCCTTGCCTTGAGACACTCACCTCCTGTTGCATCAACAGTTGCTCCCACAACATCAGCATCAAACAGAGGATCCAAGTCAACCTTAAGCTCTGATCTTGAAAAGGAGAAACGGCCGCCTCAGAGACGAAAGTTTCAAGAATTGCCAGTTGGTTCAAAAGACACAACAAAACTCAATCAGAGATTGCAACCTCTAAAAACTAATGAACAATCTGATGGTCCGGTTGTGAGGAATATATCAACAATGCCTGCCCCTAAGAAGTTGGTTCAGCCATCATCCAATGGAATGCCACCACCTCTACTAAGAACCATGCCCCCACCACCACCTCCACCTAAATTTTGTGGTCCATCTGAAGTTAAAGTACAGGCCAAGAACAAGACTTTGCTTAAGACAAAATCTGATGCAGTTCCTGATACTTTGGTCAAGCTAATGGAATATGGAGAGGAGGATGATGATGATATTGATTCTAGTGAGGAATCACTTCCTCATGACGCCGGAGCAACTGGGGTTCAAAAGCCTTTCTGGGCTTTATGA

>Glyma18g50140.2   sequence type=CDS   gene model=Glyma18g50140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGAGGATAGCATCGTTAGGGTTTCTTCTTCCAACGAAACCTCCGCGGCCAACGAGGCTTCGCAGACGCGGCAGAGAAAGAAGAGAAAGTGGGATCAACCGGCGGAGTCATTGATGCCAGTTGGGATGACAGTCCCTGGAGCACTCCCTTTGAGCAATGCCGTGACTCTTGGAGGGGTTGCATTTCCCGCCATGGCTCCGGTGATCTCCGGCACTCTTTTGACAAATCCTCTGGCAGCTTCTGCTCAGCTTCCGCAACATGCAGCTGCAGCTGCTGTTGCCGCGCAAAAGTTGAATCAACATAAGATCCAAGATGAATTAATAATTGCTCGAGAAATTGTCATAAATGATGCAGAGTCTTCTGTTCGCTACAAGTTGACAAAACGCCAAACACAAGAGGAGATCCAGAGGTGCACTGGTGCCATAGTTATAACTAGGGGAAAGTATCGGCTGCCTAATGCACCACATGATGGAGAGAAGCCACTGTACCTTCACATCTCTGCAGGAGCTCATATAAAAGAGACAGCAGAACGGATTTTAGCTGTTGATCGTGCTGCTGCAATGATTGAAGAAATTCTCAAACAGGTGCAAAATTCACAGTCAATTTCTTCCGTCACACCTTCCGCTTTGGTTAATGGAGTGAAGATGCTGAGTACATGCGTGTTTTTGGGCTTTGATGCTGATCCTTCATTGAACATTGTTGCTCGTATACGTGGACCAAATGATCAGTATATAAATCACATTATGAATGAAACAGGAGCGACAGTTGTACTGAGAGGACGTGGTTCAGGAAACAATGAATGCTTGAATGGAGAAGATGGACAGCAGCCCCTGCATCTGTTTTTGTCTAGTAACAATGCGAAAAGTCTTGAAGATGCTAAGCTTTTGGCTGAAAATCTTTTGGATACAATCTGTACGGAGTGTGGTGCTTCAAGGGTTTCATCATGTAAGGTTTATAGTGCTGTTCCACCTCCACAGCAGGCATACACTGCTGTTCCACCTCCCCAGCAGGTATATAGCGCTGTTCCACCACCCCAGCAGGTTTATAGTGGCCCTTCTTTGTTGAAGCAGATTCCTGCTGCCATTTCACCCCCACAAGTTTATAGTGCTGTTCCACCCCCACAGCAGTTGTTGACTGGAGTTCAGAGTTCTGGAATTGACCTAGAGGCAGGTGCCAGCCTAATCACTAGTTCAATGTCAGCAGCTGGGGTCTTGACACCGGTTCCTCCAGCTTCCTTGGTTGGAGTGACTGGTGTCACTGGTGCCCTCACTTTGGGGACTACACCCCAATCTATAAGACATTTAAGCTCTGGGCCTCAAGCAAACATGACTGGTTATACTCCTCCCCCTTTAGTATCAGGTGGTACTAGCTATATTGGATATGGCGGATTATATCCTCAAGCTACCCCTTTGCAACAAGTTGCCCTTGCCTTGAGACACTCACCTCCTGTTGCATCAACAGTTGCTCCCACAACATCAGCATCAAACAGAGGATCCAAGTCAACCTTAAGCTCTGATCTTGAAAAGGAGAAACGGCCGCCTCAGAGACGAAAGTTTCAAGAATTGCCAGTTGGTTCAAAAGACACAACAAAACTCAATCAGGTATTTTCTCTGACCTTCTATGAAGCAAAAAGCCTGACACTGGACCTGTCTGTTGGGCCATTGGTTTGTATGTTTGACAGGGTTTTCAGTTTTGGAGGAGTAGTAGGGTGCTTGTGGCTTCACAGCATATGCCCTTTCCAATCCAAGATGTTATTCTAA

Predicted protein sequences of Glyma18g50140

Limit To All Plant Sequences

>Glyma18g50140.1   sequence type=predicted peptide   gene model=Glyma18g50140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEDSIVRVSSSNETSAANEASQTRQRKKRKWDQPAESLMPVGMTVPGALPLSNAVTLGGVAFPAMAPVISGTLLTNPLAASAQLPQHAAAAAVAAQKLNQHKIQDELIIAREIVINDAESSVRYKLTKRQTQEEIQRCTGAIVITRGKYRLPNAPHDGEKPLYLHISAGAHIKETAERILAVDRAAAMIEEILKQVQNSQSISSVTPSALVNGVKMLSTCVFLGFDADPSLNIVARIRGPNDQYINHIMNETGATVVLRGRGSGNNECLNGEDGQQPLHLFLSSNNAKSLEDAKLLAENLLDTICTECGASRVSSCKVYSAVPPPQQAYTAVPPPQQVYSAVPPPQQVYSGPSLLKQIPAAISPPQVYSAVPPPQQLLTGVQSSGIDLEAGASLITSSMSAAGVLTPVPPASLVGVTGVTGALTLGTTPQSIRHLSSGPQANMTGYTPPPLVSGGTSYIGYGGLYPQATPLQQVALALRHSPPVASTVAPTTSASNRGSKSTLSSDLEKEKRPPQRRKFQELPVGSKDTTKLNQRLQPLKTNEQSDGPVVRNISTMPAPKKLVQPSSNGMPPPLLRTMPPPPPPPKFCGPSEVKVQAKNKTLLKTKSDAVPDTLVKLMEYGEEDDDDIDSSEESLPHDAGATGVQKPFWAL*

>Glyma18g50140.2   sequence type=predicted peptide   gene model=Glyma18g50140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEDSIVRVSSSNETSAANEASQTRQRKKRKWDQPAESLMPVGMTVPGALPLSNAVTLGGVAFPAMAPVISGTLLTNPLAASAQLPQHAAAAAVAAQKLNQHKIQDELIIAREIVINDAESSVRYKLTKRQTQEEIQRCTGAIVITRGKYRLPNAPHDGEKPLYLHISAGAHIKETAERILAVDRAAAMIEEILKQVQNSQSISSVTPSALVNGVKMLSTCVFLGFDADPSLNIVARIRGPNDQYINHIMNETGATVVLRGRGSGNNECLNGEDGQQPLHLFLSSNNAKSLEDAKLLAENLLDTICTECGASRVSSCKVYSAVPPPQQAYTAVPPPQQVYSAVPPPQQVYSGPSLLKQIPAAISPPQVYSAVPPPQQLLTGVQSSGIDLEAGASLITSSMSAAGVLTPVPPASLVGVTGVTGALTLGTTPQSIRHLSSGPQANMTGYTPPPLVSGGTSYIGYGGLYPQATPLQQVALALRHSPPVASTVAPTTSASNRGSKSTLSSDLEKEKRPPQRRKFQELPVGSKDTTKLNQVFSLTFYEAKSLTLDLSVGPLVCMFDRVFSFGGVVGCLWLHSICPFQSKMLF*

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