SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G02100 | AT | Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein | chr3:368840-370484 REVERSE LENGTH=464 | SoyBase | E_val: 3.00E-120 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008194 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016758 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups | SoyBase | N/A | ISS |
| KOG1192 | KOG | UDP-glucuronosyl and UDP-glucosyl transferase | JGI | ISS | |
| PTHR11926 | Panther | GLUCOSYL/GLUCURONOSYL TRANSFERASES | JGI | ISS | |
| PTHR11926:SF15 | Panther | UDP-GLUCURONOSYLTRANSFERASE RELATED | JGI | ISS | |
| PF00201 | PFAM | UDP-glucoronosyl and UDP-glucosyl transferase | JGI | ISS | |
| UniRef100_G7L596 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucosyltransferase HRA25 n=1 Tax=Medicago truncatula RepID=G7L596_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N4J5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4J5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g50110 not represented in the dataset |
Glyma18g50110 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g26840 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g266100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g50110.2 sequence type=transcript gene model=Glyma18g50110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAAAAAGCATTATGCATATAAACTACAAACATTAATTTCACCAAGCCCTCCTGACTCAACAAATAAATAACAATCACACCCTTTTATCTTCGAGTCTTCTAATAATTCTCTTGTTTGCCTTCATCAACAGTTCATGCTAATGGGCATCCCTCACTTTCTTTGTATACCATTTCCAGTTCAAGGACATGTGAACCCCCTTATGCAATTCTCTCAGCTTTTGGCCAAGCATGGTTGCAAGGTCACTTTTGTGCACACTGAGTTCAACCACAAACGAGCCAAGACTTCTGGTGCTGACAACCTCGAGCATTCGCAAGTAGGGTTGGTGACTCTCCCTGATGGTTTGGATGCTGAAGATGACAGAAGTGATGTTACGAAAGTTCTTTTGTCTATTAAAAGCAACATGCCTGCTTTGCTTCCAAAGCTCATAGAAGATGTTAATGCCTTGGATGTTGACAAAAAGATCACATGTATTATTGTTACATTTACTATGAGTTGGGCTTTGGAAGTTGGCCACAGACTGGGAATCAAAGGGGCTCTTCTCTGTCCAGCATCTGCAACTTCCTTGGCTTCTGTTGCTTGCATCCCAAAGCTGATTGATGATGGCATTATTGATTCTCAAGGACTTCCTACCAAAAAACAAGAAATTCAACTCTCTCCAAATATGCCTACGATGAACACACAAAACTTTCCATGGCGTGGCTTTAATAAGATATTCTTTGACCATCTTGTGCAAGAGCTGCAAACTTCGGAGTTAGGAGAGTGGTGGCTTTGCAACACTACTTATGATCTTGAGCCTGGAGCATTTTCCATATCACCAAAGTTCCTATCCATTGGGCCATTGATGGAGAGTGAGAGCAACAAAAGTTCATTCTGGGAAGAAGACACAACTTGCTTAGAGTGGTTAGATCAACAACAACCTCAATCTGTCATATATGTTTCCTTTGGCAGTTTAGCAGTATTGGATCCAAACCAATTTGGAGAATTAGCTCTTGCACTTGATCTCCTTGACAAGCCTTTTATTTGGGTTGTACGTCCAAGTAATGACAACAAGGAAAATGCTAATGCATACCCACATGATTTTCATGGAAGTAAAGGTAAAATAATTGGTTGGGCACCACAGAAGAAGATATTGAACCACCCTGCATTGGCTTGCTTCATTAGTCACTGTGGTTGGAATTCTACCCTTGAAGGTATATGTGCTGGTGTACCTTTCTTGTGTTGGCCATGTGCCACTGATCAATATCTTGACACGTCATATATATGTGATGTGTGGAAGATTGGGCTTGGACTAGACAAGGATGAAAATGGAATAATTTTAAGGGAAGAGATAAGGAAGAAGGCGAATCAACTGCTTGTTGATGAAGACATAAAAGCTAGGTCATTGAAATTGAAGGACATGATCATAAATAACATACTAGAAGGTGGTCAGTCATCAAAGAATCTCAACTTCTTTATGGATTGGGCGAAGGCCGAGTAATGATAACGAGGTAAACAATGCATACTTTGATGAATTTCATGGAAGTAAAGGCAGAATTGTAGGTTGTACACCACAGAAGAAGATATTGAACCACCCTGCCATAGCTTGTTTCATTAGTCACTGTGGTTGGAATTCTACTATAGAAGGTGTATGTGGTGGCGTACCTTTCTTGTGTTGGCCATTAGCCCAGGATCAGTTTGTTAACAAGTCACATATTTGTGATGTGTGGAAGGTTGGATTGGGATTAGACAAGGATGAGAATGGATTCATATCAAAGGGAGAGATAAGGAAGAAGGTAGAGCAATTACTTGGTGATGACTGCATAAAAGCAAGGTCATTGAAACTGAAGGAATTGACCTTGAATAACACAGTAGAAGGTGGTCACTCTTCAAAGAATCTCAAAAACTTTATCAGCTGGGCAGATTAATAATGCTTTGGTATAGTTTGGAAATCGTTGTAATTTAG
>Glyma18g50110.1 sequence type=CDS gene model=Glyma18g50110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTAATGGGCATCCCTCACTTTCTTTGTATACCATTTCCAGTTCAAGGACATGTGAACCCCCTTATGCAATTCTCTCAGCTTTTGGCCAAGCATGGTTGCAAGGTCACTTTTGTGCACACTGAGTTCAACCACAAACGAGCCAAGACTTCTGGTGCTGACAACCTCGAGCATTCGCAAGTAGGGTTGGTGACTCTCCCTGATGGTTTGGATGCTGAAGATGACAGAAGTGATGTTACGAAAGTTCTTTTGTCTATTAAAAGCAACATGCCTGCTTTGCTTCCAAAGCTCATAGAAGATGTTAATGCCTTGGATGTTGACAAAAAGATCACATGTATTATTGTTACATTTACTATGAGTTGGGCTTTGGAAGTTGGCCACAGACTGGGAATCAAAGGGGCTCTTCTCTGTCCAGCATCTGCAACTTCCTTGGCTTCTGTTGCTTGCATCCCAAAGCTGATTGATGATGGCATTATTGATTCTCAAGGACTTCCTACCAAAAAACAAGAAATTCAACTCTCTCCAAATATGCCTACGATGAACACACAAAACTTTCCATGGCGTGGCTTTAATAAGATATTCTTTGACCATCTTGTGCAAGAGCTGCAAACTTCGGAGTTAGGAGAGTGGTGGCTTTGCAACACTACTTATGATCTTGAGCCTGGAGCATTTTCCATATCACCAAAGTTCCTATCCATTGGGCCATTGATGGAGAGTGAGAGCAACAAAAGTTCATTCTGGGAAGAAGACACAACTTGCTTAGAGTGGTTAGATCAACAACAACCTCAATCTGTCATATATGTTTCCTTTGGCAGTTTAGCAGTATTGGATCCAAACCAATTTGGAGAATTAGCTCTTGCACTTGATCTCCTTGACAAGCCTTTTATTTGGGTTGTACGTCCAAGTAATGACAACAAGGAAAATGCTAATGCATACCCACATGATTTTCATGGAAGTAAAGGTAAAATAATTGGTTGGGCACCACAGAAGAAGATATTGAACCACCCTGCATTGGCTTGCTTCATTAGTCACTGTGGTTGGAATTCTACCCTTGAAGGTATATGTGCTGGTGTACCTTTCTTGTGTTGGCCATGTGCCACTGATCAATATCTTGACACGTCATATATATGTGATGTGTGGAAGATTGGGCTTGGACTAGACAAGGATGAAAATGGAATAATTTTAAGGGAAGAGATAAGGAAGAAGGCGAATCAACTGCTTGTTGATGAAGACATAAAAGCTAGGTCATTGAAATTGAAGGACATGATCATAAATAACATACTAGAAGGTGGTCAGTCATCAAAGAATCTCAACTTCTTTATGGATTGGGCGAAGTAA >Glyma18g50110.2 sequence type=CDS gene model=Glyma18g50110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTAATGGGCATCCCTCACTTTCTTTGTATACCATTTCCAGTTCAAGGACATGTGAACCCCCTTATGCAATTCTCTCAGCTTTTGGCCAAGCATGGTTGCAAGGTCACTTTTGTGCACACTGAGTTCAACCACAAACGAGCCAAGACTTCTGGTGCTGACAACCTCGAGCATTCGCAAGTAGGGTTGGTGACTCTCCCTGATGGTTTGGATGCTGAAGATGACAGAAGTGATGTTACGAAAGTTCTTTTGTCTATTAAAAGCAACATGCCTGCTTTGCTTCCAAAGCTCATAGAAGATGTTAATGCCTTGGATGTTGACAAAAAGATCACATGTATTATTGTTACATTTACTATGAGTTGGGCTTTGGAAGTTGGCCACAGACTGGGAATCAAAGGGGCTCTTCTCTGTCCAGCATCTGCAACTTCCTTGGCTTCTGTTGCTTGCATCCCAAAGCTGATTGATGATGGCATTATTGATTCTCAAGGACTTCCTACCAAAAAACAAGAAATTCAACTCTCTCCAAATATGCCTACGATGAACACACAAAACTTTCCATGGCGTGGCTTTAATAAGATATTCTTTGACCATCTTGTGCAAGAGCTGCAAACTTCGGAGTTAGGAGAGTGGTGGCTTTGCAACACTACTTATGATCTTGAGCCTGGAGCATTTTCCATATCACCAAAGTTCCTATCCATTGGGCCATTGATGGAGAGTGAGAGCAACAAAAGTTCATTCTGGGAAGAAGACACAACTTGCTTAGAGTGGTTAGATCAACAACAACCTCAATCTGTCATATATGTTTCCTTTGGCAGTTTAGCAGTATTGGATCCAAACCAATTTGGAGAATTAGCTCTTGCACTTGATCTCCTTGACAAGCCTTTTATTTGGGTTGTACGTCCAAGTAATGACAACAAGGAAAATGCTAATGCATACCCACATGATTTTCATGGAAGTAAAGGTAAAATAATTGGTTGGGCACCACAGAAGAAGATATTGAACCACCCTGCATTGGCTTGCTTCATTAGTCACTGTGGTTGGAATTCTACCCTTGAAGGTATATGTGCTGGTGTACCTTTCTTGTGTTGGCCATGTGCCACTGATCAATATCTTGACACGTCATATATATGTGATGTGTGGAAGATTGGGCTTGGACTAGACAAGGATGAAAATGGAATAATTTTAAGGGAAGAGATAAGGAAGAAGGCGAATCAACTGCTTGTTGATGAAGACATAAAAGCTAGGTCATTGAAATTGAAGGACATGATCATAAATAACATACTAGAAGGTGGTCAGTCATCAAAGAATCTCAACTTCTTTATGGATTGGGCGAAGGCCGAGTAA
>Glyma18g50110.1 sequence type=predicted peptide gene model=Glyma18g50110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLMGIPHFLCIPFPVQGHVNPLMQFSQLLAKHGCKVTFVHTEFNHKRAKTSGADNLEHSQVGLVTLPDGLDAEDDRSDVTKVLLSIKSNMPALLPKLIEDVNALDVDKKITCIIVTFTMSWALEVGHRLGIKGALLCPASATSLASVACIPKLIDDGIIDSQGLPTKKQEIQLSPNMPTMNTQNFPWRGFNKIFFDHLVQELQTSELGEWWLCNTTYDLEPGAFSISPKFLSIGPLMESESNKSSFWEEDTTCLEWLDQQQPQSVIYVSFGSLAVLDPNQFGELALALDLLDKPFIWVVRPSNDNKENANAYPHDFHGSKGKIIGWAPQKKILNHPALACFISHCGWNSTLEGICAGVPFLCWPCATDQYLDTSYICDVWKIGLGLDKDENGIILREEIRKKANQLLVDEDIKARSLKLKDMIINNILEGGQSSKNLNFFMDWAK* >Glyma18g50110.2 sequence type=predicted peptide gene model=Glyma18g50110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLMGIPHFLCIPFPVQGHVNPLMQFSQLLAKHGCKVTFVHTEFNHKRAKTSGADNLEHSQVGLVTLPDGLDAEDDRSDVTKVLLSIKSNMPALLPKLIEDVNALDVDKKITCIIVTFTMSWALEVGHRLGIKGALLCPASATSLASVACIPKLIDDGIIDSQGLPTKKQEIQLSPNMPTMNTQNFPWRGFNKIFFDHLVQELQTSELGEWWLCNTTYDLEPGAFSISPKFLSIGPLMESESNKSSFWEEDTTCLEWLDQQQPQSVIYVSFGSLAVLDPNQFGELALALDLLDKPFIWVVRPSNDNKENANAYPHDFHGSKGKIIGWAPQKKILNHPALACFISHCGWNSTLEGICAGVPFLCWPCATDQYLDTSYICDVWKIGLGLDKDENGIILREEIRKKANQLLVDEDIKARSLKLKDMIINNILEGGQSSKNLNFFMDWAKAE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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