Glyma18g50030 - SoyBase

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Report for Sequence Feature Glyma18g50030

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59289198
stop:	59290808
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g50030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39280	AT	Annotation by Michelle Graham. TAIR10: expansin A23 \| chr5:15730713-15731706 REVERSE LENGTH=259	SoyBase	E_val: 3.00E-88	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0009828	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall loosening	SoyBase	N/A	ISS
GO:0009831	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification involved in multidimensional cell growth	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
PF01357	PFAM	Pollen allergen	JGI		ISS
PF03330	PFAM	Rare lipoprotein A (RlpA)-like double-psi beta-barrel	JGI		ISS
UniRef100_G7L585	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alpha-expansin n=1 Tax=Medicago truncatula RepID=G7L585_MEDTR	SoyBase	E_val: 1.00E-107	ISS
UniRef100_UPI000233F25E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F25E related cluster n=1 Tax=unknown RepID=UPI000233F25E	SoyBase	E_val: 2.00E-163	ISS

Expression Patterns of Glyma18g50030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g50030

Paralog	Evidence	Comments
Glyma08g26540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g50030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g265400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g50030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g50030

Limit To All Plant Sequences

>Glyma18g50030.2   sequence type=CDS   gene model=Glyma18g50030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAGGTCTCACTGTTTGTTTCCTTTGGCCTTTTTAATGGTTCTCTTTGTACCAGCCTTGGCACATGGTCGAAGAAGGGGATGGCATCTAGCCCATGCAACTTTCTATGGTGACATGCAAGGTGGAGACACCATGCAGGGAGCTTGTGGTTATGGTGATCTCTACCAGCAAGGATATGGGCTTGAAACCACAGCCCTAAGCACAGCTCTATTCAACAATGGCCAGACATGTGGTGCATGTTTTGAGATTATGTGTGTGAACTCCCAATGGTGCATTCCCAACGCAGGCCCAATCAAACACTTCGACTTGTCCATGAAAATGTTCACCAAAATTGCCATATACAAAGCAGGGATCATCCCAGTCATGTATCGCCGTGTCCCATGCAACAAAAGTGGGGGTGTCAAGTTTGAGATGAAAGGGAACCCTTATTGGTTGTTGGTTTTGTTGTACAATGTTGGCAATGCTGGTGATGTTACTCAAGTCAGCATCAAAGGGTCTTCAAACACTGGCTGGCAATCTATGTCACGTGTTTGGGGACAAAATTGGGTTACTGGGTCTAATTTGGTAGGACAAGCCTTGTCGTTTCAAGTCACTACTAGTGATGGCAAAATGTTGGAGTTTGATAATGTTGCCCCTTCCAATTGGCAATTTGGACAGAGCTACGAGACCTACCAAAATTTTTAG

Predicted protein sequences of Glyma18g50030

Limit To All Plant Sequences

>Glyma18g50030.2   sequence type=predicted peptide   gene model=Glyma18g50030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARSHCLFPLAFLMVLFVPALAHGRRRGWHLAHATFYGDMQGGDTMQGACGYGDLYQQGYGLETTALSTALFNNGQTCGACFEIMCVNSQWCIPNAGPIKHFDLSMKMFTKIAIYKAGIIPVMYRRVPCNKSGGVKFEMKGNPYWLLVLLYNVGNAGDVTQVSIKGSSNTGWQSMSRVWGQNWVTGSNLVGQALSFQVTTSDGKMLEFDNVAPSNWQFGQSYETYQNF*

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