SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G15530 | AT | Annotation by Michelle Graham. TAIR10: biotin carboxyl carrier protein 2 | chr5:5038955-5040437 FORWARD LENGTH=255 | SoyBase | E_val: 4.00E-66 | ISS |
| GO:0006633 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009317 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: acetyl-CoA carboxylase complex | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0003989 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acetyl-CoA carboxylase activity | SoyBase | N/A | ISS |
| GO:0009374 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: biotin binding | SoyBase | N/A | ISS |
| PTHR23151 | Panther | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED | JGI | ISS | |
| PTHR23151:SF25 | Panther | BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2), BIOTIN | JGI | ISS | |
| PF00364 | PFAM | Biotin-requiring enzyme | JGI | ISS | |
| UniRef100_Q9GE06 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Biotin carboxyl carrier protein subunit n=1 Tax=Glycine max RepID=Q9GE06_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9GE06 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Biotin carboxyl carrier protein subunit n=1 Tax=Glycine max RepID=Q9GE06_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g50020 not represented in the dataset |
Glyma18g50020 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g265300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g50020.1 sequence type=CDS gene model=Glyma18g50020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCATTCACGATCCCTTGCCCCAAGTGCGTTGTTGTTCCTTTTGCTCATTTGGGACTGAACTCTCAGACCCAGCAACGGAACGCGCTGGGGTTGAAGAAATCGCTCTCATTTGGATCTTTGAGTAGTGATTCGGCGCCAAATGGGATTCAGTGCCTTAACAAGAAGCAATCTTCTGTCTGGAAGCTTCAAGCACAACCAAAAGAGGCTGTTACTGTTGAAAATTCTGCACCTGTACAGGTCAATGGACCTAAAATTGCTCCACCAGAAGAGAAGGATGACCATAATGGAAAACCCTCTGGTCCAAGCACTTCTGCTGATGCATCTTCAATTTCTGCATTTATGAACCAAGTTTCAGATCTTGTTAAACTTGTGGACTCTAAAGATATTATGGAGCTGCAACTCAAGCAAGCAAACTGTGAACTCGTGATAAGAAAGAAGGAAGCTTTGCTGCCTCCACCAGCTACATTTGTAGCTCCAGTGTCACAACCATTTCCATATCCCACAAATTCTCTTCCAGCAGCACCACCTCCAGTTGCTACTTCCACTCCTGCAAGTTCTCCATCTTCAAAAGCAGCTCCTGCCTTACCTCCTGCAAAAGCAAGCAAATCATCTCATCCGGCACTGAAATGTCCAATGGCAGGAACCTTTTATCGAAGTCCAGCACCTGGCGAACCTCCATTTGTCAAGGTGGGAGATAAAGTGCAGAAGGGGCAGGTCATTTGCATTATTGAGGCTATGAAACTAATGAATGAAATTGAAGCTGATCAATCTGGAACAGTAGCTGAGGTTGTAGCAGAGGATGGGAAACCAGTCAGTGTAGACACGCCTCTTTTTGTAATTGTACCATGA
>Glyma18g50020.1 sequence type=predicted peptide gene model=Glyma18g50020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASFTIPCPKCVVVPFAHLGLNSQTQQRNALGLKKSLSFGSLSSDSAPNGIQCLNKKQSSVWKLQAQPKEAVTVENSAPVQVNGPKIAPPEEKDDHNGKPSGPSTSADASSISAFMNQVSDLVKLVDSKDIMELQLKQANCELVIRKKEALLPPPATFVAPVSQPFPYPTNSLPAAPPPVATSTPASSPSSKAAPALPPAKASKSSHPALKCPMAGTFYRSPAPGEPPFVKVGDKVQKGQVICIIEAMKLMNEIEADQSGTVAEVVAEDGKPVSVDTPLFVIVP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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