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Report for Sequence Feature Glyma18g50010

Feature Type:gene_model
Chromosome:Gm18
Start:59276059
stop:59280056
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g50010
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15510AT Annotation by Michelle Graham. TAIR10: TPX2 (targeting protein for Xklp2) protein family | chr5:5034120-5036614 FORWARD LENGTH=497 SoyBaseE_val: 3.00E-157ISS
GO:0000226GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization SoyBaseN/AISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0016458GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing SoyBaseN/AISS
GO:0034968GO-bp Annotation by Michelle Graham. GO Biological Process: histone lysine methylation SoyBaseN/AISS
GO:0051322GO-bp Annotation by Michelle Graham. GO Biological Process: anaphase SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR14326Panther TARGETING PROTEIN FOR XKLP2 JGI ISS
PTHR14326:SF10Panther JGI ISS
PF06886PFAM Targeting protein for Xklp2 (TPX2) JGI ISS
UniRef100_F4K9T9UniRef Annotation by Michelle Graham. Most informative UniRef hit: TPX2 (Targeting protein for Xklp2) family protein n=1 Tax=Arabidopsis thaliana RepID=F4K9T9_ARATH SoyBaseE_val: 2.00E-154ISS
UniRef100_UPI000233F108UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F108 related cluster n=1 Tax=unknown RepID=UPI000233F108 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g50010
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g50010
ParalogEvidenceComments
Glyma08g26530 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g50010 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g265200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g50010
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g50010
>Glyma18g50010.1   sequence type=CDS   gene model=Glyma18g50010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCCGTAGCATCATCGCCAACGCCACTTGGGTCTCGATCCAAGGCTCAACAAGAACCATCCAAAAACATCGAGAATTTCGACCCCAACAAACAACAACAAAGCCCGGTTTCGAAACCCTCTTGTTCCTCTCCTTCTTCTTCGCCTCTCGTGAAATCAAAGAATCCTAATAAAGTCGACTATTTCTCCCCTAAGAACAAGATCCGGCAGAGAAAGTTCTTGGTGGCAAAGAAGAAGAAAGAGAAAAAGGCAGAAGAAGAGGGTTCAGGTGCTGCTGCTGACTCTTGCAAGTGCAAAGCAAGTGGTGCAAATGCAAACGAGAACAACAAGTGTGTGTGTGTGGCTTACAACAACCTAAGGAAGTCCCAGGAAGAGTTTTTCAAGAACAATGATGATGGTGTTGTTGATGATGGTGAAGAAGAGGGTTTTGAGAGTGTGGTTGTTGAAGAAGAAAAAGGAGAATCGTTATTGGGGAATGGTGAAGTGAGTGGTTTGGTTGTGAAGCGTAGGAGGGAGAGGTTGATGGAAGAGGCGAGGAAGAGTGTTCTTCCTCAAAGTGGGTCTGGGAAAGTTATGCATTTGGTGAAGGCATTTGAGAAGCTTCTCTCTATTCCCAAAACCAAGGAGGAAGAAGATGAGGAGGGATCTCAAGATCAAGAGAGGGTAGGGAAATGGGCACTGCCAGGGTTGCAGCAGCAACAAGTTTCTGAGATTTCATTTTGCCCACCAAACTGTGTCCTCACATCGCAAAACCTTGGCTTGGATCCGGGGGCATCGGTTTCCTCTTCCTGGGATAGCAGCCGTGCAAGCGTCTCTAGCAGGACTTCTACTGGGGGTCGAAGAAGCAGGAAAAATAGCCTGGAATCATCAAGTACTTTTGGGAGAAGAAGGTTGAAAAAGAAGCAGCAGAAAGTCACTAGCCAAAAGCCATTCAAGCTAAGAACTGAGCAACGGGGCAAGTTAAAAGAAGAAGAATTTGTAAAGAAGATACAAGAGATGGCAGCAGTAGAAGAGAAGCAAAGGATACCTGTTGCACAGGGTCTTCCTTGGACAACAGATGAACCAGAGTGCTTGGTTAAACCTCCAGTGAAAGAAATCACAAGGCCTGTTGACCTGAAGCTTCACAGTGATGTGCGGGCATTAGATCGCGCTGAGTTTGACCATCAGGTGCAAGAAAAGTTGAGCTTAATAGAGCAATACAAACTGGAAAGGGAGAGACAACAGAAGTTGGCAGAAGAAGAAGAACTAAGAAGGTTGAGGAAGGAACTCGTACCAAAAGCACAACCCATGCCATATTTTGATAGACCTTTTATTCCAAGGAGGTCAATGAAGAGTCCAACTATACCTAGAGAACCCAAGTTTTATAATCATAAGAAGATCAAGTGCAGCTTATCATCATGGAACGATATAAGCCCCTACTCCTCCTCCTGCCTTAATTAA
Predicted protein sequences of Glyma18g50010
>Glyma18g50010.1   sequence type=predicted peptide   gene model=Glyma18g50010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAVASSPTPLGSRSKAQQEPSKNIENFDPNKQQQSPVSKPSCSSPSSSPLVKSKNPNKVDYFSPKNKIRQRKFLVAKKKKEKKAEEEGSGAAADSCKCKASGANANENNKCVCVAYNNLRKSQEEFFKNNDDGVVDDGEEEGFESVVVEEEKGESLLGNGEVSGLVVKRRRERLMEEARKSVLPQSGSGKVMHLVKAFEKLLSIPKTKEEEDEEGSQDQERVGKWALPGLQQQQVSEISFCPPNCVLTSQNLGLDPGASVSSSWDSSRASVSSRTSTGGRRSRKNSLESSSTFGRRRLKKKQQKVTSQKPFKLRTEQRGKLKEEEFVKKIQEMAAVEEKQRIPVAQGLPWTTDEPECLVKPPVKEITRPVDLKLHSDVRALDRAEFDHQVQEKLSLIEQYKLERERQQKLAEEEELRRLRKELVPKAQPMPYFDRPFIPRRSMKSPTIPREPKFYNHKKIKCSLSSWNDISPYSSSCLN*






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