Glyma18g50000 - SoyBase

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Report for Sequence Feature Glyma18g50000

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59266905
stop:	59269769
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g50000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15490	AT	Annotation by Michelle Graham. TAIR10: UDP-glucose 6-dehydrogenase family protein \| chr5:5027872-5029314 REVERSE LENGTH=480	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0042732	GO-bp	Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process	SoyBase	N/A	ISS
GO:0052546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003979	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucose 6-dehydrogenase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016616	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
GO:0051287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NAD binding	SoyBase	N/A	ISS
KOG2666	KOG	UDP-glucose/GDP-mannose dehydrogenase	JGI		ISS
PTHR11374	Panther	UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE	JGI		ISS
PF00984	PFAM	UDP-glucose/GDP-mannose dehydrogenase family, central domain	JGI		ISS
PF03720	PFAM	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain	JGI		ISS
PF03721	PFAM	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain	JGI		ISS
UniRef100_I1N4I6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucose 6-dehydrogenase n=1 Tax=Glycine max RepID=I1N4I6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1N4I6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UDP-glucose 6-dehydrogenase n=1 Tax=Glycine max RepID=I1N4I6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g50000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g50000

Paralog	Evidence	Comments
Glyma08g26520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g50000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g265100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g50000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g50000

Limit To All Plant Sequences

>Glyma18g50000.1   sequence type=CDS   gene model=Glyma18g50000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAGATTTGCTGCATTGGTGCTGGATATGTGGGGGGTCCTACTATGGCAGTCATTGCACTTAAGTGCCCATCCATTGAAGTTGCTGTTGTTGATATCTCTAAATCCCGCATTGCAGCCTGGAACAGTGACCAGCTTCCTATCTATGAACCTGGCCTTGATGGTGTTGTGAAGCAATGCCGTGGCAAGAACCTCTTCTTCAGCACTGATGTTGAAAAGCATGTCTTTGAGGCTGACATAGTGTTTGTCTCTGTCAACACCCCAACCAAAACTCAGGGTCTTGGAGCTGGTAAAGCAGCAGATTTGACATATTGGGAGAGCGCAGCTCGCATGATTGCTGATGTTTCGAAGTCTGACAAGATCGTTGTAGAGAAATCCACAGTCCCGGTTAAAACAGCTGAGGCAATAGAGAAGATTCTGACCCACAATAGCAAGGGAATCAGATTCCAGATTTTATCAAACCCTGAATTCCTTGCTGAGGGAACTGCAATCAAAGATCTCTTTAACCCAGACCGTGTTCTTATTGGAGGCAGGGAAACCCCAGAGGGCCAAAAAGCTATTCAAGCATTGAAGGATGTTTATGCTCAATGGGTCCCCGAAGAAAGAATACTAACCACAAATCTCTGGTCGGCAGAACTATCTAAGCTTGCTGCTAATGCCTTCTTGGCCCAAAGGATTTCATCTGTCAATGCCATGTCAGCACTTTGTGAGGCTACCGGGGCAAATGTTCAACAGGTGTCCTATTCTGTTGGAACAGACTCAAGGATTGGACCCAAGTTCCTCAACGCCAGTGTTGGTTTTGGTGGATCCTGCTTCCAGAAGGATATCTTGAACCTTGTTTACATCTGCGAGTGCAATGGCCTTCCAGAGGTGGCTGAGTACTGGAAACAAGTTATCAAGATCAATGATTATCAGAAGAGCCGTTTTGTGAACCGTGTAGTTGCATCAATGTTCAACACAGTCTCAAACAAAAAGATTGCTATTCTGGGATTTGCCTTCAAGAAAGACACTGGTGACACTAGGGAGACCCCTGCCATTGATGTATGCCAGGGGCTACTTGGTGATAAGGCCAACCTGAGCATATACGATCCACAAGTAACTGAGGACCAAATTCAGAGGGATCTATCAATGAACAAGTTTGATTGGGATCATCCTATCCACTTGCAGCCCACAAGTCCTACTACTGTGAAGAAGGTCAGTGTTGTTTGGGATGCCTATGAAGCAACAAAGGATGCACATGGCCTTTGCATTCTAACCGAGTGGGATGAGTTCAAGACTCTCGACTACCAGAGGATATTTGACAACATGCAAAAACCAGCATTTGTTTTTGATGGCAGAAACATTGTGGATGCTGATAAGTTGCGTGAGATTGGCTTCATAGTTTACTCAATTGGTAAGCCACTGGATCCATGGCTCAAAGACATGCCTGCTTTGGCGTAA

Predicted protein sequences of Glyma18g50000

Limit To All Plant Sequences

>Glyma18g50000.1   sequence type=predicted peptide   gene model=Glyma18g50000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIRFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGQKAIQALKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVQQVSYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANLSIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGLCILTEWDEFKTLDYQRIFDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPALA*

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