Glyma18g49950 - SoyBase

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Report for Sequence Feature Glyma18g49950

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59236954
stop:	59240691
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01050	AT	Annotation by Michelle Graham. TAIR10: membrane-anchored ubiquitin-fold protein 1 precursor \| chr3:13854-14675 FORWARD LENGTH=117	SoyBase	E_val: 2.00E-48	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6SXL4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SXL4_SOYBN	SoyBase	E_val: 5.00E-80	ISS
UniRef100_G7L472	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Membrane-anchored ubiquitin-fold protein n=1 Tax=Medicago truncatula RepID=G7L472_MEDTR	SoyBase	E_val: 1.00E-64	ISS

Expression Patterns of Glyma18g49950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49950

Paralog	Evidence	Comments
Glyma08g26430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g264600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g49950

Limit To All Plant Sequences

>Glyma18g49950.3   sequence type=transcript   gene model=Glyma18g49950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGGGAAATTGGAAATGGAGAGGATCCGGGGGACCTTATTTCATCCTTTTCTCCGATTTCACCATTAATTATTATTATTGCTTTGCAAAACACTAACCAACCAAAACAAAGGGAAAAAAAAAGTATCCACTTTCCCTTCTTCTTCTTCCATTTGGGTTTTCTCAAAAGTGAAAAGCAAATTCCGTGACTTCCACAATCACCACTCGGATCAGTATGCACACCAGTCTCAGAAAACCCACAAGAACAAAAATCAGATTTTTCCAAAACTCTTGAGTGATAGACTTTGAATGAAATCTTGTTTTTCATTAACGAGATTCAATTGAAGTGAAGTGATTATTCACTGGAAAACTTATTTTTCATAGTATTGGAGGTACAACTGAAGCTGTTAGATTTGTTTTAACTACACGAGTTCGTTGGATATTTGAGCATGGCTGGGAATCAAGATCAGTTTGAGATCAAGTTTCGGTTGACTGATGGTTCTGATATTGGCCCCAAAAGTTTTCCTGCAGCTACTAGTATTGCAACATTAAAAGAGAGTGTTCTCGCTCAGTGGCCAAAAGACAAGGAGAATGGCCCAAAGACCATAAAAGATGTGAAGTTAATTAACGCAGGAAAAATTTTGGAGAACAACAGAACAGTTGGGGAATGCCAGAGTCCGTTATGTGATACCCCTGATACTGTTACAACAATGCATGTGGTTGTGCAACATCCTGCTACGGAGAAAGAGAAGAAAGCGGCAAACAAAGCAACACAGAACAAATGCATGTGCGTTATTTTATAGCATCCAGATTGAATAGCAGATGTCATCTGTCTTAGTTGATTAGGGACAGTTCATTTTACATAACCTGCGTCGTCAAATATTTCAACATACACAAATTATTTGGTTGCATGCCCCATTCATACTACAGTCAAGGAGTACTGGACTATTTTCTTTATAAAAATGGAGTACTTGACTTGGTGAAGATTGTGAAGCTTGTAGTTCCCTGATTCCTGTGCGGCACTAAATTTCTTGCACAATTTCATAGGAGATGTTCTTCTTCTGGTTTCAACATGTATTAGGTGTTGCCTCATCAGACACTTGGTATAATTGTTGATTGAAATGAACTCTACTAGTTTGCCATCTTACCCCCTCATATATTTTACAATTCTTCTCTTTCGTGTATCTGATTCAACATACTTAATCCAGACATGTATGCGTTGAGTATTTGAATGTGTTTCAATTTTCTGGTTGTTTATATGGTACCATTGCTACCCACTCTTGTATAGCAGCTATGGCAATAGTGATTTAACAACATCTCTCACAAAATGGAGATTTGATGCTTGAATTCAATTTCCTTAGATTTTATATTTTAGAAAAAAGACTACTGTGTCAAACAATTCAAGTTTCT

>Glyma18g49950.4   sequence type=transcript   gene model=Glyma18g49950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGGGAAATTGGAAATGGAGAGGATCCGGGGGACCTTATTTCATCCTTTTCTCCGATTTCACCATTAATTATTATTATTGCTTTGCAAAACACTAACCAACCAAAACAAAGGGAAAAAAAAAGTATCCACTTTCCCTTCTTCTTCTTCCATTTGGGTTTTCTCAAAAGTGAAAAGCAAATTCCGTGACTTCCACAATCACCACTCGGATCAAACTCTTGAGTGATAGACTTTGAATGAAATCTTGTTTTTCATTAACGAGATTCAATTGAAGTGAAGTGATTATTCACTGGAAAACTTATTTTTCATAGTATTGGAGGTACAACTGAAGCTGTTAGATTTGTTTTAACTACACGAGTTCGTTGGATATTTGAGCATGGCTGGGAATCAAGATCAGTTTGAGATCAAGTTTCGGTTGACTGATGGTTCTGATATTGGCCCCAAAAGTTTTCCTGCAGCTACTAGTATTGCAACATTAAAAGAGAGTGTTCTCGCTCAGTGGCCAAAAGACAAGGAGAATGGCCCAAAGACCATAAAAGATGTGAAGTTAATTAACGCAGGAAAAATTTTGGAGAACAACAGAACAGTTGGGGAATGCCAGAGTCCGTTATGTGATACCCCTGATACTGTTACAACAATGCATGTGGTTGTGCAACATCCTGCTACGGAGAAAGAGAAGAAAGCGGCAAACAAAGCAACACAGAACAAATGCATGTGCGTTATTTTATAGCATCCAGATTGAATAGCAGATGTCATCTGTCTTAGTTGATTAGGGACAGTTCATTTTACATAACCTGCGTCGTCAAATATTTCAACATACACAAATTATTTGGTTGCATGCCCCATTCATACTACAGTCAAGGAGTACTGGACTATTTTCTTTATAAAAATGGAGTACTTGACTTGGTGAAGATTGTGAAGCTTGTAGTTCCCTGATTCCTGTGCGGCACTAAATTTCTTGCACAATTTCATAGGAGATGTTCTTCTTCTGGTTTCAACATGTATTAGGTGTTGCCTCATCAGACACTTGGTATAATTGTTGATTGAAATGAACTCTACTAGTTTGCCATCTTACCCCCTCATATATTTTACAATTCTTCTCTTTCGTGTATCTGATTCAACATACTTAATCCAGACATGTATGCGTTGAGTATTTGAATGTGTTTCAATTTTCTGGTTGTTTATATGGTACCATTGCTACCCACTCTTGTATAGCAGCTATGGCAATAGTGATTTAACAACATCTCTCACAAAATGGAGATTTGATGCTTGAATTCAATTTCCTTAGATTTTATATTTTAGAAAAAAGACTACTGTGTCAAACAATTCAAGTTTCT

Coding sequences of Glyma18g49950

Limit To All Plant Sequences

>Glyma18g49950.2   sequence type=CDS   gene model=Glyma18g49950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGGAATCAAGATCAGTTTGAGATCAAGTTTCGGTTGACTGATGGTTCTGATATTGGCCCCAAAAGTTTTCCTGCAGCTACTAGTATTGCAACATTAAAAGAGAGTGTTCTCGCTCAGTGGCCAAAAGACAAGGAGAATGGCCCAAAGACCATAAAAGATGTGAAGTTAATTAACGCAGGAAAAATTTTGGAGAACAACAGAACAGTTGGGGAATGCCAGAGTCCGTTATGTGATACCCCTGATACTGTTACAACAATGCATGTGGTTGTGCAACATCCTGCTACGGAGAAAGAGAAGAAAGCGGCAAACAAAGCAACACAGAACAAATGCATGTGCGTTATTTTATAG

>Glyma18g49950.3   sequence type=CDS   gene model=Glyma18g49950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGGAATCAAGATCAGTTTGAGATCAAGTTTCGGTTGACTGATGGTTCTGATATTGGCCCCAAAAGTTTTCCTGCAGCTACTAGTATTGCAACATTAAAAGAGAGTGTTCTCGCTCAGTGGCCAAAAGACAAGGAGAATGGCCCAAAGACCATAAAAGATGTGAAGTTAATTAACGCAGGAAAAATTTTGGAGAACAACAGAACAGTTGGGGAATGCCAGAGTCCGTTATGTGATACCCCTGATACTGTTACAACAATGCATGTGGTTGTGCAACATCCTGCTACGGAGAAAGAGAAGAAAGCGGCAAACAAAGCAACACAGAACAAATGCATGTGCGTTATTTTATAG

>Glyma18g49950.4   sequence type=CDS   gene model=Glyma18g49950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGGAATCAAGATCAGTTTGAGATCAAGTTTCGGTTGACTGATGGTTCTGATATTGGCCCCAAAAGTTTTCCTGCAGCTACTAGTATTGCAACATTAAAAGAGAGTGTTCTCGCTCAGTGGCCAAAAGACAAGGAGAATGGCCCAAAGACCATAAAAGATGTGAAGTTAATTAACGCAGGAAAAATTTTGGAGAACAACAGAACAGTTGGGGAATGCCAGAGTCCGTTATGTGATACCCCTGATACTGTTACAACAATGCATGTGGTTGTGCAACATCCTGCTACGGAGAAAGAGAAGAAAGCGGCAAACAAAGCAACACAGAACAAATGCATGTGCGTTATTTTATAG

Predicted protein sequences of Glyma18g49950

Limit To All Plant Sequences

>Glyma18g49950.2   sequence type=predicted peptide   gene model=Glyma18g49950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGNQDQFEIKFRLTDGSDIGPKSFPAATSIATLKESVLAQWPKDKENGPKTIKDVKLINAGKILENNRTVGECQSPLCDTPDTVTTMHVVVQHPATEKEKKAANKATQNKCMCVIL*

>Glyma18g49950.3   sequence type=predicted peptide   gene model=Glyma18g49950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGNQDQFEIKFRLTDGSDIGPKSFPAATSIATLKESVLAQWPKDKENGPKTIKDVKLINAGKILENNRTVGECQSPLCDTPDTVTTMHVVVQHPATEKEKKAANKATQNKCMCVIL*

>Glyma18g49950.4   sequence type=predicted peptide   gene model=Glyma18g49950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGNQDQFEIKFRLTDGSDIGPKSFPAATSIATLKESVLAQWPKDKENGPKTIKDVKLINAGKILENNRTVGECQSPLCDTPDTVTTMHVVVQHPATEKEKKAANKATQNKCMCVIL*

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