Glyma18g49930 - SoyBase

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Report for Sequence Feature Glyma18g49930

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59226332
stop:	59232974
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15450	AT	Annotation by Michelle Graham. TAIR10: casein lytic proteinase B3 \| chr5:5014399-5018255 REVERSE LENGTH=968	SoyBase	E_val: 0	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0016485	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein processing	SoyBase	N/A	ISS
GO:0019538	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009532	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid stroma	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG1051	KOG	Chaperone HSP104 and related ATP-dependent Clp proteases	JGI		ISS
PTHR11638	Panther	ATP-DEPENDENT CLP PROTEASE	JGI		ISS
PTHR11638:SF18	Panther	CLPC	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
PF02861	PFAM	Clp amino terminal domain	JGI		ISS
PF07724	PFAM	AAA domain (Cdc48 subfamily)	JGI		ISS
PF10431	PFAM	C-terminal, D2-small domain, of ClpB protein	JGI		ISS
UniRef100_G7KLS1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein clpB n=1 Tax=Medicago truncatula RepID=G7KLS1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N4I0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N4I0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g49930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49930

Paralog	Evidence	Comments
Glyma08g26410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g264400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g49930

Limit To All Plant Sequences

>Glyma18g49930.1   sequence type=CDS   gene model=Glyma18g49930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCCACGTCGTCGTTTTCTCTCTCCCACGCCGTTGTTCCCTTCTCATGCAACACAAAACATGGTCATTTATCTCACAACCTCCTCTATCTCTCATTCGCAAAACCCATTTCCCTAAAGCCCCTCCAATCGCTTCCCTTCAACAAAAGACACCCTTTTGCAAATGGGTTTCAGAGAATTCGAAGAAATTCCTCACCTTTCATCGTTCGCTGTGAAGCTTCAAGTGGAAGGATTACGCAGCAAGAGTTCACAGAGATGGCGTGGCAGGCAATAGTTTCGTCACCAGAGGTGGCCAAGGAGAACAAGCATCAGATTGTGGAGACAGAGCACTTGATGAAGGCTTTGTTGGAGCAGAAGAATGGACTTGCTCGCAGGATCTTTTCCAAGGTTGGGGTGGATAACACTCGCCTTCTAGAAGCTACTGATAAGTACATTCAGCGGCAACCCAAGGTTCTAGGGGAATCCTCTGGTTCAATGTTGGGCCGTGATTTGGAGGCATTGATTCAGAGAGCTAGGGACCACAAGAAAAAGTATGGGGATTCATTTGTTTCAGTTGAGCACTTGGTTCTTGCTTTTACCCAAGATCAACGGTTTGGGAAGCAATTCTTCAGAGATTTTCAAATATCTGAGCCAGCTCTAAAATCTGCAATAGAGTCTGTTAGGGGACGTCAGTCAGTTATTGATCAAGATCCCGAAGGAAAGTATGAAGCCTTGGAAAAATATGGAAAAGATTTGACCGCAATGGCAAAAGCTGGAAAACTTGACCCAGTCATAGGAAGAGATGATGAAATACGAAGGTGCATTCAAATTCTCTCCAGGAGGACAAAGAACAATCCCGTGCTAATTGGTGAACCTGGTGTTGGAAAGACCGCCATTTCTGAAGGACTGGCTCAGAGAATAGTGCAAGGAGATGTTCCTCAAGCTTTAATGGACCGTAGGCTTATATCTCTGGATATGGGAGCACTTATTGCTGGAGCGAAGTACCGGGGAGAATTCGAGGATAGGCTGAAAGCTGTACTAAAAGAAGTGACAGAATCTGATGGTCAGACTATCCTTTTCATTGACGAGATTCATACAGTTGTTGGGGCAGGAGCCACAAATGGTGCTATGGATGCTGGTAATCTCTTAAAACCTATGCTTGGTCGGGGTGAGCTGCGATGTATTGGTGCAACAACACTGGACGAGTATCGGAAGTATATCGAGAAGGACCCAGCACTAGAGCGTCGCTTCCAACAAGTTTATGTTGACCAACCTACAGTTGAAGATACAATTTCAATACTAAGGGGACTGCGGGAAAGGTATGAACTACATCATGGAGTCCGAATTTCTGACAGTGCACTTGTTGAAGCTGCAATTCTCTCAGATAGATATATCAGTGGAAGATTTTTGCCTGACAAAGCTATTGACCTGGTTGATGAGGCAGCTGCCAAACTGAAAATGGAAATCACTTCTAAACCTACTGCACTTGATGAGATCAATAGATCAGTCCTGAAACTAGAGATGGAGAGACTCTCTCTCATGAATGATACAGATAAGGCTTCTAAAGATAGGCTGAATCGTCTTGAGGCAGAGCTTTCTCTCTTAAAAGAGAAACAGGCTGAGCTGACTGAACAGTGGGAGCATGAAAAGTCTGTAATGACTCGTATTCAATCAATCAAAGAAGAGATAGACAGAGTGAATCTTGAGATCCAACAGGCTGAACGGGAGTATGATCTTAATCGTGCTGCTGAATTAAAGTATGGCAGTCTTAACTCCTTGCAACGGCAACTTGAAAGTGCCGAGAAGGAGTTAGACGAATATATGAACTCTGGGAAGTCTATGCTGAGAGAGGAAGTTACGGGAAATGATATTGCTGAAATTGTAAGCAAGTGGACTGGTATCCCTGTTTCAAAACTTCAACAATCAGAGAGGGAGAAGTTGTTGCATTTAGAGGAAGTGCTTCATAAGCGTGTTGTAGGCCAAGACCCTGCTGTTAAGGCAATTGCTGAGGCTATCCAACGTTCAAGAGCAGGTCTTTCGGATCCTCATCGTCCAATTGCCAGCTTCATGTTTATGGGACCTACAGGTGTAGGAAAGACAGAGCTGGCTAAGGCACTTGCAGCCTACTTGTTCAACACTGAAGAAGCTCTTGTACGGATTGATATGAGCGAGTACATGGAAAAACATGCTGTTTCAAGATTGATTGGGGCTCCACCTGGATATGTTGGGTACGAAGAAGGAGGGCAACTTACTGAGATAGTTCGCCGCAGACCATATGCTGTTATTTTGTTCGATGAGATTGAGAAGGCGCACGCCGATGTCTTCAATGTATTTCTTCAAATTTTGGATGATGGAAGAGTAACCGACTCACAGGGTCGCACAGTAAGTTTTACCAACACTGTTATCATTATGACCTCAAATGTTGGATCACAGTACATCTTGAACACAGATGACGACACCACGCCAAAAGAGTTGGCTTATGAAACCATAAAACAACGTGTAATGGATGCTGCAAGATCCATCTTCCGCCCTGAGTTTATGAATAGAGTTGACGAATATATTGTTTTCCAGCCTCTAGACCGTGAACAAATAAGTAGCATTGTCAGATTACAGTTGGAGCGCGTGCAGAAGAGAATTGCAGATCGCAAGATGAAAATCCAAGTGACGGATGCTGCTGTTCAACTTCTTGGAAGTTTGGGGTATGACCCCAACTATGGTGCTAGGCCAGTCAAGCGAGTGATTCAGCAGAATGTGGAGAATGAACTCGCCAAGGGTATTCTCAGAGGAGAATTTAAGGAAGAAGATGCAATTATAATAGACACAGAACTCACAGCATTTACCAACGGCCAACTTCCCCAGCAAAAGCTTGTTTTTAAGAAACTTGCAGCTGATTCAGAATCTACCCCTCAAGACACCTTGGAACCCTTCCCACAGGCTCCATGA

Predicted protein sequences of Glyma18g49930

Limit To All Plant Sequences

>Glyma18g49930.1   sequence type=predicted peptide   gene model=Glyma18g49930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTSSFSLSHAVVPFSCNTKHGHLSHNLLYLSFAKPISLKPLQSLPFNKRHPFANGFQRIRRNSSPFIVRCEASSGRITQQEFTEMAWQAIVSSPEVAKENKHQIVETEHLMKALLEQKNGLARRIFSKVGVDNTRLLEATDKYIQRQPKVLGESSGSMLGRDLEALIQRARDHKKKYGDSFVSVEHLVLAFTQDQRFGKQFFRDFQISEPALKSAIESVRGRQSVIDQDPEGKYEALEKYGKDLTAMAKAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMDRRLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESDGQTILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPTVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLMNDTDKASKDRLNRLEAELSLLKEKQAELTEQWEHEKSVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNSLQRQLESAEKELDEYMNSGKSMLREEVTGNDIAEIVSKWTGIPVSKLQQSEREKLLHLEEVLHKRVVGQDPAVKAIAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALAAYLFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEIVRRRPYAVILFDEIEKAHADVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNTDDDTTPKELAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDREQISSIVRLQLERVQKRIADRKMKIQVTDAAVQLLGSLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKEEDAIIIDTELTAFTNGQLPQQKLVFKKLAADSESTPQDTLEPFPQAP*

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