Glyma18g49911 - SoyBase

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Report for Sequence Feature Glyma18g49911

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59216115
stop:	59219756
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49911

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39380	AT	Annotation by Michelle Graham. TAIR10: Plant calmodulin-binding protein-related \| chr5:15759163-15760686 REVERSE LENGTH=507	SoyBase	E_val: 2.00E-15	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PF07839	PFAM	Plant calmodulin-binding domain	JGI		ISS
UniRef100_Q9FLZ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-binding protein-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9FLZ6_ARATH	SoyBase	E_val: 1.00E-12	ISS
UniRef100_UPI000233F106	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F106 related cluster n=1 Tax=unknown RepID=UPI000233F106	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g49911

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g49911 not represented in the dataset	Glyma18g49911 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49911

Paralog	Evidence	Comments
Glyma08g26390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49911 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g264100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49911

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g49911

Limit To All Plant Sequences

>Glyma18g49911.2   sequence type=transcript   gene model=Glyma18g49911   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAACGAAACAGAAGAAACAAAAACCAGAAACTGTTGCTTTCTTGCACGCACGTTCTCTTCTAAAATGAAATAACCCTTCAAAAGGGGTGGCTCAGTGTTCACTTCGTTACGTTCTGTTCCTTTTCCGTCGCTTTCTGTTGAAGCACCCTTTTTGTTTATGAAGCTCTGTTGTCAAAGTATAAAACAAAGGTGCGTTATTTTCAGAATTTTATCATCTGGGCCGTGCAAGTTTTCTCCCATACGCTAGTGGGTTTGCTGAAAAATGTGATTTTGGTGGGTTATTGAGATGGGTTTTTCGGAACATGCTCTGATCTCTTCCTCTGTCTCTGTTGCTTTGTCTTGGATTGACTTCGTTTTAGTGTTTTTTTTGCTGGAAAATGTTTCCTTGGCCGTTACGGTTGCTGGGGGTTCTGTAGTTTGAAGAATCGGCATAAGTATTTTTCCCCCGATCTTCTTCTGCATAGTTCATTTCCCGTCCGATGGCTAAGGAAAGTGTTGATTTACCACTGATTCCAAAAGTAACTATGTCAAGTGGGGTTGCATTAAGAAGGCACTCTGCTGGAATAGCAAATTCTGGAAATAATGAAAAGAAAGTTGTTGTTCCTCTTTATCTCAGAGCATCTACTGGCTCCTGTCATGATTTTTGTAAATATGGGAGGAAGAATGTGGAAGAAGGAAGGGAGAAACTCTCCATGATTAAGAGAGCCGGAAGAAAATCACTTTCCCGAAGTTCAGAAGGCATTATTGGTGGGATAATAACATCAGTTGCCAATCAAAAAGCATCACTTGATTCGAAGCCAACAAAGATGTTAACAGTGAAACATAATGAATCAGTTGATTCTAAGATCCAGATTTCTGATGCTTCTGACACAGATAAGATGGAACTCCCAACAAAATCATCTGGCAGCCAAAAACAAATGGGGAATAAAGTTCTGGTGAACACAAGCAAAGCATCATTGGTCAGGGTCAAACCATCATTCCTTCCAAAATCACATATTTCTTCAATCCCCGAAGCAAGGAGAGGGGGAATTTTTTCAAGTTTTGAGGTGGAAGCTCTATCAAAACCAGCTTCCAAAAGGGTGGAAGCTTCACCAACAGCAACTTCTGAGAGGGTGAAAACTCATCCAAAATCAACTTCTCAAATGGTCAAAACTTCACCAAAATCCATGTTCAAGATGAAGCAAACTTCATCAAAGTTGTCTCCTTTTGAAGATAAAGAAATGGAGTTGTCTGATAAGCATGTGACTTCTTTGAATCCAGATTTCGTCACAATGCAGACCATATCTTCTGTGAATTATTCTGATGTCTTTGGTGGCCAAAAGAATAGTAAGATTAAGATGAACAAGAAAGAAGCCTCACCCAAATCTTCTTCCAGAGGAATTGGCAGTGTTAGTGCAAGAAAGCACAAGGGCCTGAAAATCGTGCCTCATCTTATGAATCAACCCAAGCCTATAAAAGTTGAACTTGAGGAAGACAACAATGAGGCTCAGGAAAAGACTTTGTATGTCATCAAGATGGAAAGTGCAAACCAAAGTTCGCTCTCTGATCAAAATGAAAGCCAGGCTATCGAATTACCCCTTTCTAATTCATTGTCATCACCCAAGTTTTCACCCCCCTCAAAATCTCAATCCTCGTCCCAAGAAGACCAAGAGGAATCTGAATATGCAAATAGTGAATTTGAGGAGGATGCTTGTCCAGAGAACCATGAAATTGATTACATGGCTAATGTGGAAACTTTGGAAGTTGAAGAGAATGGAAAGCCTCAAAATGATGGGATTGTTTGTTCTGAAAACATCGAGTGCCAAAATTTAGGGAGGAAATTGGTTGAAACTCAAATTGAATATACTGCTTATGTGGACACTTTGGAAGCTGAGGAGAATGGAAAGCCTCAAAAGGATGGGATTGTTTGTTCTGAAGCCAAGGAGTGCAAAAAGTTAGGGGGAGAATTGGTTGAAACTCAAATTGAAAAGGGTAGTCTGAGGAGCCTTAAAATCCAGAAAGGAAAAGTGTTGGGGGCGAGCGTCACTAATGTCAAGGCTGTTGCTATAACTGCTCCAGAGAAGGTTGTTTTGAGACGTCAAAATGTGCAGGTCAAGAAAGATGGACAAGGATTGTACAATAATGTGATTGAGGAAACAGCAACTAAACTTGTTGAAACTCAGAAGGGCAAGGTTAAAGCACTGATTGATGCCTTTGAAGCTGTAATCTCTCTTGAAGAGAAAAGAACTTCTGCTGCAAACATTGTCAATTGATCTTGGTAGACTTTTTCTAGATTTCTCTTATTTTGTAAAGAAATGGTAGGAAAATAAATCCAAGCTTGTGGCAGTAAATGTGAGCCAACAGGCTGATTGTTCAGCTGAAAATATAGATAAATTTGTCTTGTGTCTTGTCTGTAGAAGACCTTGTTGTGTAGAGTTGAACGGGGGATCTTGTATTCACCACCACTCTTGTGTGACCATATACTCATCATTCTGTTCTTCGAAACTTAGACCTGTTGTTATTGATTTTTATCTTTTGAATAAAAAAATGATAGCATGGATTTAGCA

Coding sequences of Glyma18g49911

Limit To All Plant Sequences

>Glyma18g49911.1   sequence type=CDS   gene model=Glyma18g49911   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAAGGAAAGTGTTGATTTACCACTGATTCCAAAAGTAACTATGTCAAGTGGGGTTGCATTAAGAAGGCACTCTGCTGGAATAGCAAATTCTGGAAATAATGAAAAGAAAGTTGTTGTTCCTCTTTATCTCAGAGCATCTACTGGCTCCTGTCATGATTTTTGTAAATATGGGAGGAAGAATGTGGAAGAAGGAAGGGAGAAACTCTCCATGATTAAGAGAGCCGGAAGAAAATCACTTTCCCGAAGTTCAGAAGGCATTATTGGTGGGATAATAACATCAGTTGCCAATCAAAAAGCATCACTTGATTCGAAGCCAACAAAGATGTTAACAGTGAAACATAATGAATCAGTTGATTCTAAGATCCAGATTTCTGATGCTTCTGACACAGATAAGATGGAACTCCCAACAAAATCATCTGGCAGCCAAAAACAAATGGGGAATAAAGTTCTGGTGAACACAAGCAAAGCATCATTGGTCAGGGTCAAACCATCATTCCTTCCAAAATCACATATTTCTTCAATCCCCGAAGCAAGGAGAGGGGGAATTTTTTCAAGTTTTGAGGTGGAAGCTCTATCAAAACCAGCTTCCAAAAGGGTGGAAGCTTCACCAACAGCAACTTCTGAGAGGGTGAAAACTCATCCAAAATCAACTTCTCAAATGGTCAAAACTTCACCAAAATCCATGTTCAAGATGAAGCAAACTTCATCAAAGTTGTCTCCTTTTGAAGATAAAGAAATGGAGTTGTCTGATAAGCATGTGACTTCTTTGAATCCAGATTTCGTCACAATGCAGACCATATCTTCTGTGAATTATTCTGATGTCTTTGGTGGCCAAAAGAATAGTAAGATTAAGATGAACAAGAAAGAAGCCTCACCCAAATCTTCTTCCAGAGGAATTGGCAGTGTTAGTGCAAGAAAGCACAAGGGCCTGAAAATCGTGCCTCATCTTATGAATCAACCCAAGCCTATAAAAGTTGAACTTGAGGAAGACAACAATGAGGCTCAGGAAAAGACTTTGTATGTCATCAAGATGGAAAGTGCAAACCAAAGTTCGCTCTCTGATCAAAATGAAAGCCAGGCTATCGAATTACCCCTTTCTAATTCATTGTCATCACCCAAGTTTTCACCCCCCTCAAAATCTCAATCCTCGTCCCAAGAAGACCAAGAGGAATCTGAATATGCAAATAGTGAATTTGAGGAGGATGCTTGTCCAGAGAACCATGAAATTGATTACATGGCTAATGTGGAAACTTTGGAAGTTGAAGAGAATGGAAAGCCTCAAAATGATGGGATTGTTTGTTCTGAAAACATCGAGTGCCAAAATTTAGGGAGGAAATTGGTTGAAACTCAAATTGAATATACTGCTTATGTGGACACTTTGGAAGCTGAGGAGAATGGAAAGCCTCAAAAGGATGGGATTGTTTGTTCTGAAGCCAAGGAGTGCAAAAAGTTAGGGGGAGAATTGGTTGAAACTCAAATTGAAAAGGGTAGTCTGAGGAGCCTTAAAATCCAGAAAGGAAAAGTGTTGGGGGCGAGCGTCACTAATGTCAAGGCTGTTGCTATAACTGCTCCAGAGAAGGTTGTTTTGAGACGTCAAAATGTGCAGGTCAAGAAAGATGGACAAGGATTGTACAATAATGTGATTGAGGAAACAGCAACTAAACTTGTTGAAACTCAGAAGGGCAAGGTTAAAGCACTGATTGATGCCTTTGAAGCTGTAATCTCTCTTGAAGAGAAAAGAACTTCTGCTGCAAACATTGTCAATTGA

>Glyma18g49911.2   sequence type=CDS   gene model=Glyma18g49911   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAAGGAAAGTGTTGATTTACCACTGATTCCAAAAGTAACTATGTCAAGTGGGGTTGCATTAAGAAGGCACTCTGCTGGAATAGCAAATTCTGGAAATAATGAAAAGAAAGTTGTTGTTCCTCTTTATCTCAGAGCATCTACTGGCTCCTGTCATGATTTTTGTAAATATGGGAGGAAGAATGTGGAAGAAGGAAGGGAGAAACTCTCCATGATTAAGAGAGCCGGAAGAAAATCACTTTCCCGAAGTTCAGAAGGCATTATTGGTGGGATAATAACATCAGTTGCCAATCAAAAAGCATCACTTGATTCGAAGCCAACAAAGATGTTAACAGTGAAACATAATGAATCAGTTGATTCTAAGATCCAGATTTCTGATGCTTCTGACACAGATAAGATGGAACTCCCAACAAAATCATCTGGCAGCCAAAAACAAATGGGGAATAAAGTTCTGGTGAACACAAGCAAAGCATCATTGGTCAGGGTCAAACCATCATTCCTTCCAAAATCACATATTTCTTCAATCCCCGAAGCAAGGAGAGGGGGAATTTTTTCAAGTTTTGAGGTGGAAGCTCTATCAAAACCAGCTTCCAAAAGGGTGGAAGCTTCACCAACAGCAACTTCTGAGAGGGTGAAAACTCATCCAAAATCAACTTCTCAAATGGTCAAAACTTCACCAAAATCCATGTTCAAGATGAAGCAAACTTCATCAAAGTTGTCTCCTTTTGAAGATAAAGAAATGGAGTTGTCTGATAAGCATGTGACTTCTTTGAATCCAGATTTCGTCACAATGCAGACCATATCTTCTGTGAATTATTCTGATGTCTTTGGTGGCCAAAAGAATAGTAAGATTAAGATGAACAAGAAAGAAGCCTCACCCAAATCTTCTTCCAGAGGAATTGGCAGTGTTAGTGCAAGAAAGCACAAGGGCCTGAAAATCGTGCCTCATCTTATGAATCAACCCAAGCCTATAAAAGTTGAACTTGAGGAAGACAACAATGAGGCTCAGGAAAAGACTTTGTATGTCATCAAGATGGAAAGTGCAAACCAAAGTTCGCTCTCTGATCAAAATGAAAGCCAGGCTATCGAATTACCCCTTTCTAATTCATTGTCATCACCCAAGTTTTCACCCCCCTCAAAATCTCAATCCTCGTCCCAAGAAGACCAAGAGGAATCTGAATATGCAAATAGTGAATTTGAGGAGGATGCTTGTCCAGAGAACCATGAAATTGATTACATGGCTAATGTGGAAACTTTGGAAGTTGAAGAGAATGGAAAGCCTCAAAATGATGGGATTGTTTGTTCTGAAAACATCGAGTGCCAAAATTTAGGGAGGAAATTGGTTGAAACTCAAATTGAATATACTGCTTATGTGGACACTTTGGAAGCTGAGGAGAATGGAAAGCCTCAAAAGGATGGGATTGTTTGTTCTGAAGCCAAGGAGTGCAAAAAGTTAGGGGGAGAATTGGTTGAAACTCAAATTGAAAAGGGTAGTCTGAGGAGCCTTAAAATCCAGAAAGGAAAAGTGTTGGGGGCGAGCGTCACTAATGTCAAGGCTGTTGCTATAACTGCTCCAGAGAAGGTTGTTTTGAGACGTCAAAATGTGCAGGTCAAGAAAGATGGACAAGGATTGTACAATAATGTGATTGAGGAAACAGCAACTAAACTTGTTGAAACTCAGAAGGGCAAGGTTAAAGCACTGATTGATGCCTTTGAAGCTGTAATCTCTCTTGAAGAGAAAAGAACTTCTGCTGCAAACATTGTCAATTGA

Predicted protein sequences of Glyma18g49911

Limit To All Plant Sequences

>Glyma18g49911.1   sequence type=predicted peptide   gene model=Glyma18g49911   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKESVDLPLIPKVTMSSGVALRRHSAGIANSGNNEKKVVVPLYLRASTGSCHDFCKYGRKNVEEGREKLSMIKRAGRKSLSRSSEGIIGGIITSVANQKASLDSKPTKMLTVKHNESVDSKIQISDASDTDKMELPTKSSGSQKQMGNKVLVNTSKASLVRVKPSFLPKSHISSIPEARRGGIFSSFEVEALSKPASKRVEASPTATSERVKTHPKSTSQMVKTSPKSMFKMKQTSSKLSPFEDKEMELSDKHVTSLNPDFVTMQTISSVNYSDVFGGQKNSKIKMNKKEASPKSSSRGIGSVSARKHKGLKIVPHLMNQPKPIKVELEEDNNEAQEKTLYVIKMESANQSSLSDQNESQAIELPLSNSLSSPKFSPPSKSQSSSQEDQEESEYANSEFEEDACPENHEIDYMANVETLEVEENGKPQNDGIVCSENIECQNLGRKLVETQIEYTAYVDTLEAEENGKPQKDGIVCSEAKECKKLGGELVETQIEKGSLRSLKIQKGKVLGASVTNVKAVAITAPEKVVLRRQNVQVKKDGQGLYNNVIEETATKLVETQKGKVKALIDAFEAVISLEEKRTSAANIVN*

>Glyma18g49911.2   sequence type=predicted peptide   gene model=Glyma18g49911   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKESVDLPLIPKVTMSSGVALRRHSAGIANSGNNEKKVVVPLYLRASTGSCHDFCKYGRKNVEEGREKLSMIKRAGRKSLSRSSEGIIGGIITSVANQKASLDSKPTKMLTVKHNESVDSKIQISDASDTDKMELPTKSSGSQKQMGNKVLVNTSKASLVRVKPSFLPKSHISSIPEARRGGIFSSFEVEALSKPASKRVEASPTATSERVKTHPKSTSQMVKTSPKSMFKMKQTSSKLSPFEDKEMELSDKHVTSLNPDFVTMQTISSVNYSDVFGGQKNSKIKMNKKEASPKSSSRGIGSVSARKHKGLKIVPHLMNQPKPIKVELEEDNNEAQEKTLYVIKMESANQSSLSDQNESQAIELPLSNSLSSPKFSPPSKSQSSSQEDQEESEYANSEFEEDACPENHEIDYMANVETLEVEENGKPQNDGIVCSENIECQNLGRKLVETQIEYTAYVDTLEAEENGKPQKDGIVCSEAKECKKLGGELVETQIEKGSLRSLKIQKGKVLGASVTNVKAVAITAPEKVVLRRQNVQVKKDGQGLYNNVIEETATKLVETQKGKVKALIDAFEAVISLEEKRTSAANIVN*

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