Glyma18g49890 - SoyBase

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Report for Sequence Feature Glyma18g49890

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59178964
stop:	59184868
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15410	AT	Annotation by Michelle Graham. TAIR10: Cyclic nucleotide-regulated ion channel family protein \| chr5:5003460-5006763 REVERSE LENGTH=726	SoyBase	E_val: 0	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0007263	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitric oxide mediated signal transduction	SoyBase	N/A	ISS
GO:0009626	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005221	GO-mf	Annotation by Michelle Graham. GO Molecular Function: intracellular cyclic nucleotide activated cation channel activity	SoyBase	N/A	ISS
GO:0005222	GO-mf	Annotation by Michelle Graham. GO Molecular Function: intracellular cAMP activated cation channel activity	SoyBase	N/A	ISS
GO:0005242	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inward rectifier potassium channel activity	SoyBase	N/A	ISS
GO:0005261	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation channel activity	SoyBase	N/A	ISS
GO:0005262	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium channel activity	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
GO:0030551	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclic nucleotide binding	SoyBase	N/A	ISS
PTHR10217	Panther	VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL	JGI		ISS
PTHR10217:SF30	Panther		JGI		ISS
PF00027	PFAM	Cyclic nucleotide-binding domain	JGI		ISS
UniRef100_G7L453	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cyclic nucleotide-gated ion channel n=1 Tax=Medicago truncatula RepID=G7L453_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EB41	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EB41 related cluster n=1 Tax=unknown RepID=UPI000233EB41	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g49890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49890

Paralog	Evidence	Comments
Glyma08g26340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g263900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g49890

Limit To All Plant Sequences

>Glyma18g49890.1   sequence type=CDS   gene model=Glyma18g49890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACAACACCTTCTCCTCTCTCCTTCGTTGGATTAGCAAAAAGTTGCGACGAAGGAATTCAATTAGCAATGGTGACAGTGGCAGCGACAGCTTCCAGAACGGTGCTGCCACAGTTGTGGATGACAATCCATTTAGCAGCGGGGTGGAGTGTTACGCCTGCACGCAAGTAGGTGTGCCGGTGTTTCACTCCACCAGCTGCGACAGTGCCTTCCACCAGTTGCAGTGGGAGGCTTCGGCTGGGTCGTCTCTGGTTCCCATCCAGAGCCGACCCAACAAGGTCCTCGGCTTTCGGACCGTGTCCGGATCAAGTCGGGGGCCGTTCGGGCGGGTTCTGGATCCGAGAAGCAAGCGCGTGCAGAGGTGGAACCGCGCGCTGCTCCTGGCGCGTGGGGTGGCGCTGGCGATAGACCCGCTGTTCTTCTACTCGCTGTCGATAGGAAGGGAGGGGTCGCCGTGCTTGTACATGGACGGAGGGCTGGCGGCGATGGTGACGGTGGCGCGCACGTGCGTGGACGCCGTGCACCTCTTGCACGTGTGGCTGCAGTTCAGGCTGGCGTACGTATCGCGGGAGTCGCTGGTGGTGGGGTGCGGGAAACTCGTGTGGGACGCGCGTGAGATCGCGTCGCATTACCTGCGATCGTTGAAGGGATTCTGGTTCGACGCATTCGTGATCCTCCCAGTCCCCCAGGTTGTGTTTTGGTTGTTAGTGCCAAAATTGCTAAGAGAAGAGAAAATTAAAATCATTATGACAATAATGCTATTGATTTTTTTGTTCCAATTTCTCCCTAAGGTTTACCATAGCATCTGCATGATGAGAAGAATGCAAAAAGTCACAGGCTACATCTTCGGCACCATTTGGTGGGGTTTTGGTCTCAATCTCATAGCTTATTTTATTGCTTCTCATGTTGCTGGAGGGTGCTGGTATGTCCTTGCAATTCAACGTGTTGCGTCGTGCCTCCGGCAGCAGTGTGAGAGAACTAATGGATGCAATCTCTCTGTGTCATGCTCAGAGGAGATATGCTACCAGTCTTTGTTACCAGCTAGCGCGATAGGAGATTCATGTGGTGGAAACTCAACAGTGGTAAGAAAGCCTCTGTGCTTAGATGTTGAAGGACCTTTCAAATATGGGATCTACCAATGGGCACTTCCTGTCATATCCAGCAACTCTTTGGCTGTAAAGATTCTTTATCCCATTTTTTGGGGTTTGATGACCCTCAGCACTTTCGGAAATGATCTTGAACCCACAAGCCACTGGCTAGAAGTGATTTTCAGTATATGCATAGTACTCAGTGGACTATTGCTTTTCACATTATTGATTGGTAACATTCAGGTATTCTTACATGCAGTCATGGCAAAGAAGAGAAAGATGCAGCTGAGATGTCGTGACATGGAATGGTGGATGAGGAGGAGGCAGTTGCCATCGCGATTAAGACAGAGAGTTCGCCATTTTGAACGTCAGAGATGGGCAGCAATGGGAGGAGAAGATGAGATGGAAATGATCAAAGACTTGCCAGAGGGGCTGAGGAGGGACATCAAGCGCCATCTTTGCCTCGATCTCATTAGAAAGGTTCCTCTATTCCACAACTTGGATGATCTTATTCTTGACAACATCTGTGACAGGGTGAAACCCCTAGTCTTCTCTAAAGATGAAAAGATAATCAGAGAAGGTGATCCTGTACCAAGGATGGTGTTCATCGTCCGAGGGCGCATAAAACGCAACCAAAGCCTTAGCAAAGGCATGGTAGCCTCAAGCATCCTTGAGCCAGGAGGGTTTTTGGGTGACGAGCTGCTTTCATGGTGCCTTCGCAGGCCGTTTATCGATAGACTTCCGGCCTCCTCGGCTACATTTGTGTGTCTTGAATCATCAGAAGCCTTTGGCCTTGATGCCAATCACTTGAGGTACATCACTGATCACTTCCGGTACAAATTTGCGAACGAGAGGCTGAAGAGAACAGCAAGATATTATTCATCCAATTGGAGAACCTGGGCTGCTGTCAACATTCAATTTGCTTGGAGACGTTACAGGCAGAGGACTAAAGGTCCAGTGACCCCTGTAAGGGACACTAATGGAGGCACTGAACGCAGGCTCTTGCAATATGCTGCAATGTTCATGTCAATAAGGCCACATGACCACCTTGAATGA

Predicted protein sequences of Glyma18g49890

Limit To All Plant Sequences

>Glyma18g49890.1   sequence type=predicted peptide   gene model=Glyma18g49890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHNTFSSLLRWISKKLRRRNSISNGDSGSDSFQNGAATVVDDNPFSSGVECYACTQVGVPVFHSTSCDSAFHQLQWEASAGSSLVPIQSRPNKVLGFRTVSGSSRGPFGRVLDPRSKRVQRWNRALLLARGVALAIDPLFFYSLSIGREGSPCLYMDGGLAAMVTVARTCVDAVHLLHVWLQFRLAYVSRESLVVGCGKLVWDAREIASHYLRSLKGFWFDAFVILPVPQVVFWLLVPKLLREEKIKIIMTIMLLIFLFQFLPKVYHSICMMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLRQQCERTNGCNLSVSCSEEICYQSLLPASAIGDSCGGNSTVVRKPLCLDVEGPFKYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVIFSICIVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMEMIKDLPEGLRRDIKRHLCLDLIRKVPLFHNLDDLILDNICDRVKPLVFSKDEKIIREGDPVPRMVFIVRGRIKRNQSLSKGMVASSILEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLESSEAFGLDANHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRQRTKGPVTPVRDTNGGTERRLLQYAAMFMSIRPHDHLE*

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