Glyma18g49750 - SoyBase

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Report for Sequence Feature Glyma18g49750

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59087823
stop:	59099300
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01100	AT	Annotation by Michelle Graham. TAIR10: hypothetical protein 1 \| chr3:35013-38176 REVERSE LENGTH=703	SoyBase	E_val: 0	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
KOG1134	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR13018	Panther	PROBABLE MEMBRANE PROTEIN DUF221-RELATED	JGI		ISS
PTHR13018:SF5	Panther	RSN1(YEAST)-RELATED PROBABLE MEMBRANE PROTEIN	JGI		ISS
PF02714	PFAM	Domain of unknown function DUF221	JGI		ISS
UniRef100_A2Q3S2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Membrane protein, putative n=1 Tax=Medicago truncatula RepID=A2Q3S2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N4G4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N4G4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g49750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g49750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g262600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g49750

Limit To All Plant Sequences

>Glyma18g49750.3   sequence type=transcript   gene model=Glyma18g49750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTGTATCATTAATTTTCCTCGCAACTGTACTCACTGATGCTTCTCTCTTTTGCTTCATAGCCAGGAGTCAGGAATACAGTTGTGTTGTCATTTGAACCAGATTTCAATAATGATTCTTGCTGCTCTTCTAACTTCAGTTGTAATTAACCTTGGCCTATGTTTTATATTTTTCACCCTCTACTCTGTATTGAGGAAGCAGCCTGGTAATATTACCGTCTATGCACCACGCTTAGTTTCTGAAGGGAAACGTCAAGAGGGTGATCAATTTAACTTGGAACGTTTGTTACCTGCTACTACTGCTGGTTGGGTGAGAAAAGCATGGGAGACCTCTGAAGAAGAATTTTTATCAACTGCCGGCTTAGATGCTTTTGTTTTCATGCGCATATTTGTCTTTAGTTTAAAAATATTTACTTTTGGTGGAATTGTGGGGCTACTCATTCTTCTTCCAATTAATTGTACGGGGAGTCAACTTCATGATGATTCTGATTTTCAAAACAAGTCTTTGGATTCCTTCAGTATTTCAAATGTTAACAATGGTTCAAACAGGTTATGGATCCATTTTTGTGCCGCATATGTTTTCACTGGAGTTGTCTGCATTCTTCTTTATGATGAGTATGAGCATATTTCATCAAAAAGAATTGCTTGCTTCTATTCATCCAAGCCTGAGCCTCATCACTTTACTATATTAGTTAGAGGTATTCCTGTTCCACATGGAAGCACCTGTAACGATATTGTTGAGCACTTCTTCCAGGAGTATCACCCTTCTACTTATCATTCACATTCAGTTGTTCGTCGAAGCAGCAAACTTCAAATTCTAGTTACTGATGCAGAGAGACTGTACAAAAGGCTTACCCAACTAAAAGATAAAGATAATGCTCCTCAACGGCATAGGCGTGATGGATGTTTGGGACTTTTTGGTCACAAAGTTGATATTTTAGATCATTATGAAAAGACATTGGGAGACATTGCAGATAATGTGAGAATGGAACAGTCTTCATTGGCAGGAAAGGAAATTCCAGCTGCCTTTGTCTCATTTAAGTCACGATTTGGTGCTGCAATAGCTTTAAACATTCAAGAAGGTGTCAATCCCACAGACTGGAGTACTGAGCAAGCTCCAGAGCCTCATGATGTTTATTGGCCTTTCTTTTCTGTCACATTCATTAGAAGATGGATCAGCAAGCTGGTGGCTTATGTTGCATGCAATATTCTTACAATCCTATTTTTGATCCCAGTTGCTCTAGTACAAGGTCTTATCCATCTTGATCAGTTGGAAACCATGTTCCCTTCTCTGAGATGCATACTGAGAATGGCAGTTGTAAGCCAAGTTATAACAGGATACTTTCCCATTCTGATTCTTCAGATGTTTCTGTCTGCTGTGCCACCTATTATGATTATGCTTTCATCCTTGCAAGGATACATATCATGGAGTCAGATACAAAAAAGTGCATGCTCTAAAGTATTATGGTTTACAATTTGGAACATTTTCTTTACAAATGTATTATCAGGGTCAGCTCTCTATCGATTGACTATCTTTCTTGAGCCCAAAGAGTTTCCCAGAGTACTAGCAGAAGCTGTACCAGCACAGGCATCATTCTTCATAGCATATGTTGTGACATTCGGATGGACTAATATAGCATCAGAGCTCTTTCAATTGATTCCACTCCTTTACAATTATATTAATATAATTTTTGTTGGAGACAGTGATGATGATGATTTTGAGGCACCATCAATTCAATACCACAGTGAAATTCCCAGGATTCTTTTCTTTGGTCTTCTTGGTGTTATATACTTCATCCTTGCTCCTCTAATACTTCCATTTCTCTTGGTCTACTTTTGTTTGGGATACATCATTTACCGCAACCAGCTCTTAAATGTTTATATGGCAAAGTACCAGACTGGAGGAGAGTTTTGGCCTACAGTGCACAACTACACAATTTTTTCATTGGTTCTGATGCATATTATAGTAATTGGGATATTTGGGCTGAAGAAGCTTCCAATAGCATCTGCCTTAACTCTGCCTCTGCCTATTCTCACACTTCTGTTCAATGAGTATTGCCAGAAACGTTTCTTTCCTATTTTCAAGGCTTATCCTGCGGAATGCTTGATCAAGAAGGATAGACAAGACCAAAATGAGCCTAACATGCCTGAATTTTATGATAAGTTGGTCAAAGCATATAATGATCCAGCTCTGATGCCAATCAAATATTCAGGAGGCAGTCACAAGCCTCTACTTCCATGTGCAGATGTTTGAAGTTGATAATTAGCTTCTTATGGCTTCACTTGTAACTAACAATGTAGAGTTTAGCAAATGGTTCGTGATGCTAGCTGGTATAAGGCAATGTACCTTCAGCTTCTAACTTTCTTTCAGTTTATATTTGATTATCCTCTGTGCTGCATGTCCTCTTGATATCCTCATGAAATATTTGCCGGCACTCGTTTTGTCATATTACATACTAGAATTCAAGCCCTTTTGCTA

Coding sequences of Glyma18g49750

Limit To All Plant Sequences

>Glyma18g49750.2   sequence type=CDS   gene model=Glyma18g49750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCTTGCTGCTCTTCTAACTTCAGTTGTAATTAACCTTGGCCTATGTTTTATATTTTTCACCCTCTACTCTGTATTGAGGAAGCAGCCTGGTAATATTACCGTCTATGCACCACGCTTAGTTTCTGAAGGGAAACGTCAAGAGGGTGATCAATTTAACTTGGAACGTTTGTTACCTGCTACTACTGCTGGTTGGGTGAGAAAAGCATGGGAGACCTCTGAAGAAGAATTTTTATCAACTGCCGGCTTAGATGCTTTTGTTTTCATGCGCATATTTGTCTTTAGTTTAAAAATATTTACTTTTGGTGGAATTGTGGGGCTACTCATTCTTCTTCCAATTAATTGTACGGGGAGTCAACTTCATGATGATTCTGATTTTCAAAACAAGTCTTTGGATTCCTTCAGTATTTCAAATGTTAACAATGGTTCAAACAGGTTATGGATCCATTTTTGTGCCGCATATGTTTTCACTGGAGTTGTCTGCATTCTTCTTTATGATGAGTATGAGCATATTTCATCAAAAAGAATTGCTTGCTTCTATTCATCCAAGCCTGAGCCTCATCACTTTACTATATTAGTTAGAGGTATTCCTGTTCCACATGGAAGCACCTGTAACGATATTGTTGAGCACTTCTTCCAGGAGTATCACCCTTCTACTTATCATTCACATTCAGTTGTTCGTCGAAGCAGCAAACTTCAAATTCTAGTTACTGATGCAGAGAGACTGTACAAAAGGCTTACCCAACTAAAAGATAAAGATAATGCTCCTCAACGGCATAGGCGTGATGGATGTTTGGGACTTTTTGGTCACAAAGTTGATATTTTAGATCATTATGAAAAGACATTGGGAGACATTGCAGATAATGTGAGAATGGAACAGTCTTCATTGGCAGGAAAGGAAATTCCAGCTGCCTTTGTCTCATTTAAGTCACGATTTGGTGCTGCAATAGCTTTAAACATTCAAGAAGGTGTCAATCCCACAGACTGGAGTACTGAGCAAGCTCCAGAGCCTCATGATGTTTATTGGCCTTTCTTTTCTGTCACATTCATTAGAAGATGGATCAGCAAGCTGGTGGCTTATGTTGCATGCAATATTCTTACAATCCTATTTTTGATCCCAGTTGCTCTAGTACAAGGTCTTATCCATCTTGATCAGTTGGAAACCATGTTCCCTTCTCTGAGATGCATACTGAGAATGGCAGTTGTAAGCCAAGTTATAACAGGATACTTTCCCATTCTGATTCTTCAGATGTTTCTGTCTGCTGTGCCACCTATTATGATTATGCTTTCATCCTTGCAAGGATACATATCATGGAGTCAGATACAAAAAAGTGCATGCTCTAAAGTATTATGGTTTACAATTTGGAACATTTTCTTTACAAATGTATTATCAGGGTCAGCTCTCTATCGATTGACTATCTTTCTTGAGCCCAAAGAGTTTCCCAGAGTACTAGCAGAAGCTGTACCAGCACAGGCATCATTCTTCATAGCATATGTTGTGACATTCGGATGGACTAATATAGCATCAGAGCTCTTTCAATTGATTCCACTCCTTTACAATTATATTAATATAATTTTTGTTGGAGACAGTGATGATGATGATTTTGAGGCACCATCAATTCAATACCACAGTGAAATTCCCAGGATTCTTTTCTTTGGTCTTCTTGGTGTTATATACTTCATCCTTGCTCCTCTAATACTTCCATTTCTCTTGGTCTACTTTTGTTTGGGATACATCATTTACCGCAACCAGCTCTTAAATGTTTATATGGCAAAGTACCAGACTGGAGGAGAGTTTTGGCCTACAGTGCACAACTACACAATTTTTTCATTGGTTCTGATGCATATTATAGTAATTGGGATATTTGGGCTGAAGAAGCTTCCAATAGCATCTGCCTTAACTCTGCCTCTGCCTATTCTCACACTTCTGTTCAATGAGTATTGCCAGAAACGTTTCTTTCCTATTTTCAAGGCTTATCCTGCGGAATGCTTGATCAAGAAGGATAGACAAGACCAAAATGAGCCTAACATGCCTGAATTTTATGATAAGTTGGTCAAAGCATATAATGATCCAGCTCTGATGCCAATCAAATATTCAGGAGGCAGTCACAAGCCTCTACTTCCATGTGCAGATGTTTGA

>Glyma18g49750.3   sequence type=CDS   gene model=Glyma18g49750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCTTGCTGCTCTTCTAACTTCAGTTGTAATTAACCTTGGCCTATGTTTTATATTTTTCACCCTCTACTCTGTATTGAGGAAGCAGCCTGGTAATATTACCGTCTATGCACCACGCTTAGTTTCTGAAGGGAAACGTCAAGAGGGTGATCAATTTAACTTGGAACGTTTGTTACCTGCTACTACTGCTGGTTGGGTGAGAAAAGCATGGGAGACCTCTGAAGAAGAATTTTTATCAACTGCCGGCTTAGATGCTTTTGTTTTCATGCGCATATTTGTCTTTAGTTTAAAAATATTTACTTTTGGTGGAATTGTGGGGCTACTCATTCTTCTTCCAATTAATTGTACGGGGAGTCAACTTCATGATGATTCTGATTTTCAAAACAAGTCTTTGGATTCCTTCAGTATTTCAAATGTTAACAATGGTTCAAACAGGTTATGGATCCATTTTTGTGCCGCATATGTTTTCACTGGAGTTGTCTGCATTCTTCTTTATGATGAGTATGAGCATATTTCATCAAAAAGAATTGCTTGCTTCTATTCATCCAAGCCTGAGCCTCATCACTTTACTATATTAGTTAGAGGTATTCCTGTTCCACATGGAAGCACCTGTAACGATATTGTTGAGCACTTCTTCCAGGAGTATCACCCTTCTACTTATCATTCACATTCAGTTGTTCGTCGAAGCAGCAAACTTCAAATTCTAGTTACTGATGCAGAGAGACTGTACAAAAGGCTTACCCAACTAAAAGATAAAGATAATGCTCCTCAACGGCATAGGCGTGATGGATGTTTGGGACTTTTTGGTCACAAAGTTGATATTTTAGATCATTATGAAAAGACATTGGGAGACATTGCAGATAATGTGAGAATGGAACAGTCTTCATTGGCAGGAAAGGAAATTCCAGCTGCCTTTGTCTCATTTAAGTCACGATTTGGTGCTGCAATAGCTTTAAACATTCAAGAAGGTGTCAATCCCACAGACTGGAGTACTGAGCAAGCTCCAGAGCCTCATGATGTTTATTGGCCTTTCTTTTCTGTCACATTCATTAGAAGATGGATCAGCAAGCTGGTGGCTTATGTTGCATGCAATATTCTTACAATCCTATTTTTGATCCCAGTTGCTCTAGTACAAGGTCTTATCCATCTTGATCAGTTGGAAACCATGTTCCCTTCTCTGAGATGCATACTGAGAATGGCAGTTGTAAGCCAAGTTATAACAGGATACTTTCCCATTCTGATTCTTCAGATGTTTCTGTCTGCTGTGCCACCTATTATGATTATGCTTTCATCCTTGCAAGGATACATATCATGGAGTCAGATACAAAAAAGTGCATGCTCTAAAGTATTATGGTTTACAATTTGGAACATTTTCTTTACAAATGTATTATCAGGGTCAGCTCTCTATCGATTGACTATCTTTCTTGAGCCCAAAGAGTTTCCCAGAGTACTAGCAGAAGCTGTACCAGCACAGGCATCATTCTTCATAGCATATGTTGTGACATTCGGATGGACTAATATAGCATCAGAGCTCTTTCAATTGATTCCACTCCTTTACAATTATATTAATATAATTTTTGTTGGAGACAGTGATGATGATGATTTTGAGGCACCATCAATTCAATACCACAGTGAAATTCCCAGGATTCTTTTCTTTGGTCTTCTTGGTGTTATATACTTCATCCTTGCTCCTCTAATACTTCCATTTCTCTTGGTCTACTTTTGTTTGGGATACATCATTTACCGCAACCAGCTCTTAAATGTTTATATGGCAAAGTACCAGACTGGAGGAGAGTTTTGGCCTACAGTGCACAACTACACAATTTTTTCATTGGTTCTGATGCATATTATAGTAATTGGGATATTTGGGCTGAAGAAGCTTCCAATAGCATCTGCCTTAACTCTGCCTCTGCCTATTCTCACACTTCTGTTCAATGAGTATTGCCAGAAACGTTTCTTTCCTATTTTCAAGGCTTATCCTGCGGAATGCTTGATCAAGAAGGATAGACAAGACCAAAATGAGCCTAACATGCCTGAATTTTATGATAAGTTGGTCAAAGCATATAATGATCCAGCTCTGATGCCAATCAAATATTCAGGAGGCAGTCACAAGCCTCTACTTCCATGTGCAGATGTTTGA

Predicted protein sequences of Glyma18g49750

Limit To All Plant Sequences

>Glyma18g49750.2   sequence type=predicted peptide   gene model=Glyma18g49750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILAALLTSVVINLGLCFIFFTLYSVLRKQPGNITVYAPRLVSEGKRQEGDQFNLERLLPATTAGWVRKAWETSEEEFLSTAGLDAFVFMRIFVFSLKIFTFGGIVGLLILLPINCTGSQLHDDSDFQNKSLDSFSISNVNNGSNRLWIHFCAAYVFTGVVCILLYDEYEHISSKRIACFYSSKPEPHHFTILVRGIPVPHGSTCNDIVEHFFQEYHPSTYHSHSVVRRSSKLQILVTDAERLYKRLTQLKDKDNAPQRHRRDGCLGLFGHKVDILDHYEKTLGDIADNVRMEQSSLAGKEIPAAFVSFKSRFGAAIALNIQEGVNPTDWSTEQAPEPHDVYWPFFSVTFIRRWISKLVAYVACNILTILFLIPVALVQGLIHLDQLETMFPSLRCILRMAVVSQVITGYFPILILQMFLSAVPPIMIMLSSLQGYISWSQIQKSACSKVLWFTIWNIFFTNVLSGSALYRLTIFLEPKEFPRVLAEAVPAQASFFIAYVVTFGWTNIASELFQLIPLLYNYINIIFVGDSDDDDFEAPSIQYHSEIPRILFFGLLGVIYFILAPLILPFLLVYFCLGYIIYRNQLLNVYMAKYQTGGEFWPTVHNYTIFSLVLMHIIVIGIFGLKKLPIASALTLPLPILTLLFNEYCQKRFFPIFKAYPAECLIKKDRQDQNEPNMPEFYDKLVKAYNDPALMPIKYSGGSHKPLLPCADV*

>Glyma18g49750.3   sequence type=predicted peptide   gene model=Glyma18g49750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILAALLTSVVINLGLCFIFFTLYSVLRKQPGNITVYAPRLVSEGKRQEGDQFNLERLLPATTAGWVRKAWETSEEEFLSTAGLDAFVFMRIFVFSLKIFTFGGIVGLLILLPINCTGSQLHDDSDFQNKSLDSFSISNVNNGSNRLWIHFCAAYVFTGVVCILLYDEYEHISSKRIACFYSSKPEPHHFTILVRGIPVPHGSTCNDIVEHFFQEYHPSTYHSHSVVRRSSKLQILVTDAERLYKRLTQLKDKDNAPQRHRRDGCLGLFGHKVDILDHYEKTLGDIADNVRMEQSSLAGKEIPAAFVSFKSRFGAAIALNIQEGVNPTDWSTEQAPEPHDVYWPFFSVTFIRRWISKLVAYVACNILTILFLIPVALVQGLIHLDQLETMFPSLRCILRMAVVSQVITGYFPILILQMFLSAVPPIMIMLSSLQGYISWSQIQKSACSKVLWFTIWNIFFTNVLSGSALYRLTIFLEPKEFPRVLAEAVPAQASFFIAYVVTFGWTNIASELFQLIPLLYNYINIIFVGDSDDDDFEAPSIQYHSEIPRILFFGLLGVIYFILAPLILPFLLVYFCLGYIIYRNQLLNVYMAKYQTGGEFWPTVHNYTIFSLVLMHIIVIGIFGLKKLPIASALTLPLPILTLLFNEYCQKRFFPIFKAYPAECLIKKDRQDQNEPNMPEFYDKLVKAYNDPALMPIKYSGGSHKPLLPCADV*

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