Glyma18g49740 - SoyBase

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Report for Sequence Feature Glyma18g49740

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59082802
stop:	59086846
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G29090	AT	Annotation by Michelle Graham. TAIR10: pectin methylesterase 31 \| chr3:11073804-11075335 FORWARD LENGTH=317	SoyBase	E_val: 0	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0045488	GO-bp	Annotation by Michelle Graham. GO Biological Process: pectin metabolic process	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0030599	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity	SoyBase	N/A	ISS
PTHR22931	Panther	PHOSPHOENOLPYRUVATE DIKINASE-RELATED	JGI		ISS
PTHR22931:SF5	Panther	METHYLESTERASE INHIBITOR-RELATED	JGI		ISS
PF01095	PFAM	Pectinesterase	JGI		ISS
UniRef100_I1N4G3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1N4G3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1N4G3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1N4G3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g49740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49740

Paralog	Evidence	Comments
Glyma09g36950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g262500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g49740

Limit To All Plant Sequences

>Glyma18g49740.2   sequence type=transcript   gene model=Glyma18g49740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAACTTTCGGATCTCTATCTTTTTTATTAGAAAATTAGAATCATAGTATCCTGTCCTCTTTCCAGAAGTGAATCACCGAGGAATCTAATGTTAAGTGCAGCGAAGTAGATGAGATTGAGAAGGAAGGCAAAAACGTGTCTGACAGCAACTCTGTTAACTGTGACACCCCACTCACTCGACCATTCCATTTGTTAACTCAGTCTCAGACACAACACAATCCAAAAAACACAACATTCTGGAGATAAAATGGCAGCTTGCATATTCACGGTGGCACAGGACGGGACTGCAGATTTCCAAACGGTGCAGGAGGCTATCGACGCCGTGCCGCTGGGCAACATTCGCCGGACGGTGATTCGGGTCTCGCCGGGAACCTACCGGCAGCCGGTGTACGTTCCCAAGACCAAGAATTTCATCACTCTCGCCGCTCTCAGCCCTGAGGACACCGTGCTTACCTGGAACAACACTGCCACCGGAATTGATCACCACCAACCTGCGAGGGTGATAGGGACTGGGACGTTTGGTTGTGGAACTACCATTGTGGAAGGGGAGGACTTTATTGCTGAGAATATTACTTTCGAGAATTCTGCGCCTGAGGGTTCAGGGCAAGCAGTTGCAATTAGAGTAACAGCAGATCGATGTGCCTTCTACAATTGCAGGTTCCTTGGATGGCAGGACACACTGTACTTACATTACGGTAAACAATATTTGAAAGATTGCTACATTGAAGGAAGTGTGGACTTCATCTTTGGCAATAGCACTGCACTTTTGGAGCACTGTCATATCCACTGCAAGTCTGCGGGCTTCATAACCGCACAGAGCAGAAAATCATCACAGGAAACAACTGGTTATGTATTCTTAAGATGCGTTATCACGGGTAATGGAGGAAATTCATATGCATATCTTGGACGACCGTGGGGCCCTTTTGGAAGGGTGGTCTTTGCATACACTTACATGGATCAATGTATAAGGCATGTTGGCTGGGATAACTGGGGGAAAATGGAGAATGAAAGAAGTGTTTGCTTTTATGAATACAGGTGTTTTGGACCTGGTTGCTGTCCATCAAAAAGAGTAACCTGGTGTAGAGAATTGTTGGATGAAGAAGCTGAGCAGTTCCTCACGCATCCTTTCATTGATCCAGAACCAGAGAAACCTTGGCTTGCTCAAAGGATGGCCCTCAGGATTCCATATTCTGCTTGAAAATTACTTGGGACTGTACTTGATGAGAATATTCCAAACAGACAATCACACAGTTTATACGCTTAATATCTTGTTTATTTGGCTTAAGAAAATATGCCATGTTTTCATCCGTGTGAAGTGCTAGATGATGTGTTTTCCTGTATGAAATCTCCCAAGAAGCTATATTCCCTTCATTGAAGAATTTTGTGAGTGTGTTATAAATAGAATAAGAGCTTCATATCCAAAATATAGATGAGTTTTTTTTTTTTTTTTGACATCAAATATAGATGTGTTAGTGGTTGACATTGTAGGAATTCATTATTGAGACTCAGGTTTCATACTTGCAAAATCAATTCTGGCCAGAAATGGGCATTGGATCAGAGCCAATTTAAATAAGATCCCATCAGTACTTGTATTTGGATTATCTAATGTTATTCAAGCTCATTATCTGGTCAGTTCATTGGTTGAACCGTATAGTATTATT

Coding sequences of Glyma18g49740

Limit To All Plant Sequences

>Glyma18g49740.1   sequence type=CDS   gene model=Glyma18g49740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCTTGCATATTCACGGTGGCACAGGACGGGACTGCAGATTTCCAAACGGTGCAGGAGGCTATCGACGCCGTGCCGCTGGGCAACATTCGCCGGACGGTGATTCGGGTCTCGCCGGGAACCTACCGGCAGCCGGTGTACGTTCCCAAGACCAAGAATTTCATCACTCTCGCCGCTCTCAGCCCTGAGGACACCGTGCTTACCTGGAACAACACTGCCACCGGAATTGATCACCACCAACCTGCGAGGGTGATAGGGACTGGGACGTTTGGTTGTGGAACTACCATTGTGGAAGGGGAGGACTTTATTGCTGAGAATATTACTTTCGAGAATTCTGCGCCTGAGGGTTCAGGGCAAGCAGTTGCAATTAGAGTAACAGCAGATCGATGTGCCTTCTACAATTGCAGGTTCCTTGGATGGCAGGACACACTGTACTTACATTACGGTAAACAATATTTGAAAGATTGCTACATTGAAGGAAGTGTGGACTTCATCTTTGGCAATAGCACTGCACTTTTGGAGCACTGTCATATCCACTGCAAGTCTGCGGGCTTCATAACCGCACAGAGCAGAAAATCATCACAGGAAACAACTGGTTATGTATTCTTAAGATGCGTTATCACGGGTAATGGAGGAAATTCATATGCATATCTTGGACGACCGTGGGGCCCTTTTGGAAGGGTGGTCTTTGCATACACTTACATGGATCAATGTATAAGGCATGTTGGCTGGGATAACTGGGGGAAAATGGAGAATGAAAGAAGTGTTTGCTTTTATGAATACAGGTGTTTTGGACCTGGTTGCTGTCCATCAAAAAGAGTAACCTGGTGTAGAGAATTGTTGGATGAAGAAGCTGAGCAGTTCCTCACGCATCCTTTCATTGATCCAGAACCAGAGAAACCTTGGCTTGCTCAAAGGATGGCCCTCAGGATTCCATATTCTGCTTGA

>Glyma18g49740.2   sequence type=CDS   gene model=Glyma18g49740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCTTGCATATTCACGGTGGCACAGGACGGGACTGCAGATTTCCAAACGGTGCAGGAGGCTATCGACGCCGTGCCGCTGGGCAACATTCGCCGGACGGTGATTCGGGTCTCGCCGGGAACCTACCGGCAGCCGGTGTACGTTCCCAAGACCAAGAATTTCATCACTCTCGCCGCTCTCAGCCCTGAGGACACCGTGCTTACCTGGAACAACACTGCCACCGGAATTGATCACCACCAACCTGCGAGGGTGATAGGGACTGGGACGTTTGGTTGTGGAACTACCATTGTGGAAGGGGAGGACTTTATTGCTGAGAATATTACTTTCGAGAATTCTGCGCCTGAGGGTTCAGGGCAAGCAGTTGCAATTAGAGTAACAGCAGATCGATGTGCCTTCTACAATTGCAGGTTCCTTGGATGGCAGGACACACTGTACTTACATTACGGTAAACAATATTTGAAAGATTGCTACATTGAAGGAAGTGTGGACTTCATCTTTGGCAATAGCACTGCACTTTTGGAGCACTGTCATATCCACTGCAAGTCTGCGGGCTTCATAACCGCACAGAGCAGAAAATCATCACAGGAAACAACTGGTTATGTATTCTTAAGATGCGTTATCACGGGTAATGGAGGAAATTCATATGCATATCTTGGACGACCGTGGGGCCCTTTTGGAAGGGTGGTCTTTGCATACACTTACATGGATCAATGTATAAGGCATGTTGGCTGGGATAACTGGGGGAAAATGGAGAATGAAAGAAGTGTTTGCTTTTATGAATACAGGTGTTTTGGACCTGGTTGCTGTCCATCAAAAAGAGTAACCTGGTGTAGAGAATTGTTGGATGAAGAAGCTGAGCAGTTCCTCACGCATCCTTTCATTGATCCAGAACCAGAGAAACCTTGGCTTGCTCAAAGGATGGCCCTCAGGATTCCATATTCTGCTTGA

Predicted protein sequences of Glyma18g49740

Limit To All Plant Sequences

>Glyma18g49740.1   sequence type=predicted peptide   gene model=Glyma18g49740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAACIFTVAQDGTADFQTVQEAIDAVPLGNIRRTVIRVSPGTYRQPVYVPKTKNFITLAALSPEDTVLTWNNTATGIDHHQPARVIGTGTFGCGTTIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSSQETTGYVFLRCVITGNGGNSYAYLGRPWGPFGRVVFAYTYMDQCIRHVGWDNWGKMENERSVCFYEYRCFGPGCCPSKRVTWCRELLDEEAEQFLTHPFIDPEPEKPWLAQRMALRIPYSA*

>Glyma18g49740.2   sequence type=predicted peptide   gene model=Glyma18g49740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAACIFTVAQDGTADFQTVQEAIDAVPLGNIRRTVIRVSPGTYRQPVYVPKTKNFITLAALSPEDTVLTWNNTATGIDHHQPARVIGTGTFGCGTTIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSSQETTGYVFLRCVITGNGGNSYAYLGRPWGPFGRVVFAYTYMDQCIRHVGWDNWGKMENERSVCFYEYRCFGPGCCPSKRVTWCRELLDEEAEQFLTHPFIDPEPEKPWLAQRMALRIPYSA*

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