Report for Sequence Feature Glyma18g49730
Feature Type: gene_model
Chromosome: Gm18
Start: 59077468
stop: 59078750
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g49730
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G26790 AT
Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr2:11425270-11427669 REVERSE LENGTH=799
SoyBase E_val: 2.00E-68 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_G7J7E0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7J7E0_MEDTR
SoyBase E_val: 5.00E-117 ISS
UniRef100_I1N4G2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N4G2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g49730
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma18g49730 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma18g49730
Coding sequences of Glyma18g49730
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g49730.1 sequence type=CDS gene model=Glyma18g49730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CATTCACAAACCCACCTTAACAACCCTTTCACACCCATTTGCCTCCACTGCACTCGTCCACTCCAACACAACACCCCTTTCACACCACCCCAACAACAATCTCCCTCTTCTTTCTCCACCTTCAACGTTCTCCAAACCCTACACCATCTCCGCAACAACCCCTCCCACGCCCCCTTCTTCTTCACACACCTCCACCACCCCATCTCCACCTACGCCGTAATCATCAAAATCCTCTTTTGTTGGAACCTCCAACGCCAACTAGACTCCCTCTTCCTCCACCTCATCAAACACCACCACCCTCTTCCCTTTCCCCTCCTTAACTTCTTCGAAACACTCCTCCAAGACTTCAACAACAACAGCTTCTTGCTTAGAGCATTTAATGGTTTTATTAAAAGCTGTGTCAGCCTCAACATGTTTCATGAGGCCATTGATTTCCTTTTCCTAACACGCCGCCGCGGAATCGTCCCTGATGTCCTCACTTGCAACTTCCTCTTCAACCGGCTGGTGGAGCATGGTGAGGTGGATAAGGCATTGGCTGTTTATGAGCAGCTCAAGAGGTTTGGCTTTAGCCCCGATTGTTACACCTATGCAATTGTTATCAAGGCGTTGTGTAAAAAGGGTGACCTGAAACAACCCCTTTGTGTGTTTGAGGAGATGGAGAGAGTTGGCGGGATTCCTCATTCGTATTGCTATGCTGGTTATATTGAGGGGCTTTGTAATAATCATAGGTCTGATTTGGGGTATGAGGTGTTGCAGGCATTTAGGAATGGGAATGCGCCTTTACAGGTTTATACATACGAGGTTGTTCGCGGGTTTAGTAATGAGATGAAGAAGTTAGATGAGGCTCGGGGTGTGTTTAATGGGTATTGTAAGAGTCATAATCTGCTCAAGGCTTTGGCTTTGCACGATGAGATGGTTTCGAGGGGTGTGAAGGCGAATTGGGTGGTTATGGGGATGACTTTGGAGGTGGTGGACCAGTTTAAGGATTTGAAGGAATCCAGGATGCTTCTTGATGGGGTGGCCTACAACATTGTGTTTGATGCTTTGTGTAAGTTGGTGAAAGTGGAGGATGCAGTAGAGATGGTGGAAGACATCAATGGGTACTGCCTTCAGGGTGATCTTGTTACTGCATTTAGCGTCTTTAAGGAAATGAAGGGAAAGGGTTTTAAACCTGATGTTGTCACATCTAATGTACTGGCGACCAGGTTGTCTAGAAATGGTCATGCTTGCGAGGCAGTGAAGCTTTTGGTTTGA
Predicted protein sequences of Glyma18g49730
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g49730.1 sequence type=predicted peptide gene model=Glyma18g49730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
HSQTHLNNPFTPICLHCTRPLQHNTPFTPPQQQSPSSFSTFNVLQTLHHLRNNPSHAPFFFTHLHHPISTYAVIIKILFCWNLQRQLDSLFLHLIKHHHPLPFPLLNFFETLLQDFNNNSFLLRAFNGFIKSCVSLNMFHEAIDFLFLTRRRGIVPDVLTCNFLFNRLVEHGEVDKALAVYEQLKRFGFSPDCYTYAIVIKALCKKGDLKQPLCVFEEMERVGGIPHSYCYAGYIEGLCNNHRSDLGYEVLQAFRNGNAPLQVYTYEVVRGFSNEMKKLDEARGVFNGYCKSHNLLKALALHDEMVSRGVKANWVVMGMTLEVVDQFKDLKESRMLLDGVAYNIVFDALCKLVKVEDAVEMVEDINGYCLQGDLVTAFSVFKEMKGKGFKPDVVTSNVLATRLSRNGHACEAVKLLV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
