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Report for Sequence Feature Glyma18g49700

Feature Type:gene_model
Chromosome:Gm18
Start:59068328
stop:59072294
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g49700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G26690AT Annotation by Michelle Graham. TAIR10: emp24/gp25L/p24 family/GOLD family protein | chr1:9224299-9225682 REVERSE LENGTH=214 SoyBaseE_val: 1.00E-76ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0008320GO-mf Annotation by Michelle Graham. GO Molecular Function: protein transmembrane transporter activity SoyBaseN/AISS
KOG1691 KOG emp24/gp25L/p24 family of membrane trafficking proteins JGI ISS
PTHR22811Panther COPII-COATED VESICLE MEMBRANE PROTEIN JGI ISS
PTHR22811:SF5Panther EMP24/GP25L-RELATED JGI ISS
PF01105PFAM emp24/gp25L/p24 family/GOLD JGI ISS
UniRef100_A2Q3Q9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Emp24/gp25L/p24 n=1 Tax=Medicago truncatula RepID=A2Q3Q9_MEDTR SoyBaseE_val: 5.00E-97ISS
UniRef100_UPI000233F0FEUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F0FE related cluster n=1 Tax=unknown RepID=UPI000233F0FE SoyBaseE_val: 3.00E-160ISS

Expression Patterns of Glyma18g49700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g49700 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g262100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g49700
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g49700
>Glyma18g49700.2   sequence type=CDS   gene model=Glyma18g49700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAATCCAAATCATATTCATATTCTTCGTGTTCTTCTTCTCGCCCCTGCATTGATGGCTAGCATTGTGAATTCAATGCAGTTCGAGCTGAAATCCGGTCAATCCAAGTGCATTTCCGAGGATTTGAAGAGTAACGTCATCACCGTCGGTAATTACTACGTTCTTAATCCCAACAACGATGGATTCCCCATTCCTGATTCTCACAAGATCACTGTGAGGGTGCGTTCACCTTATGGGAACGATTTTCACTATGGGGATAGTGTGCATTCCGGTAATTTTGCATTTACTGCAGCTGAGGCTGGTGATTACACTGCTTGTTTTTCGGTGCCATCCAATCTCAACCTTGCGGTAACTGTTCTCGTTGATTTTGTTTGGAAAAATGGGTTTGCTGCGAAGGACTGGTCTAAGGTTGTCAAGAAGGGGCATATTGAAGTAATGGAATTGGAGTTACAGAAGTTGAATGATATTGCCTCATCTATCCACGACGAGATCTTTTATCTTCGTGAAAGGGAGGTAGAGATGCAAGATCTTAACGACGAGACCAACACCAAGATGTTTACCTTCACTTTGGTTTCTATTTTGGTTTGCTTGTCTGTGGCTGGTTTGCAACTATGGCATTTGAAGTCATTCTTTGAGAAGAAGAAGCTAATCTAA
Predicted protein sequences of Glyma18g49700
>Glyma18g49700.2   sequence type=predicted peptide   gene model=Glyma18g49700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNPNHIHILRVLLLAPALMASIVNSMQFELKSGQSKCISEDLKSNVITVGNYYVLNPNNDGFPIPDSHKITVRVRSPYGNDFHYGDSVHSGNFAFTAAEAGDYTACFSVPSNLNLAVTVLVDFVWKNGFAAKDWSKVVKKGHIEVMELELQKLNDIASSIHDEIFYLREREVEMQDLNDETNTKMFTFTLVSILVCLSVAGLQLWHLKSFFEKKKLI*






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