Report for Sequence Feature Glyma18g49670
Feature Type: gene_model
Chromosome: Gm18
Start: 59036062
stop: 59037542
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g49670
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G66370 AT
Annotation by Michelle Graham. TAIR10: myb domain protein 113 | chr1:24753634-24754604 FORWARD LENGTH=246
SoyBase E_val: 4.00E-55 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009753 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus
SoyBase N/A ISS
GO:0031540 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of anthocyanin biosynthetic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
KOG0048
KOG
Transcription factor, Myb superfamily
JGI ISS
PTHR10641 Panther
MYB-RELATED
JGI ISS
PF00249 PFAM
Myb-like DNA-binding domain
JGI ISS
UniRef100_B8YPF8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: R2R3 MYB transcription factor splice variant 1 n=1 Tax=Vitis vinifera RepID=B8YPF8_VITVI
SoyBase E_val: 6.00E-64 ISS
UniRef100_I1N4F7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4F7_SOYBN
SoyBase E_val: 1.00E-135 ISS
Expression Patterns of Glyma18g49670
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g49670
Paralog Evidence Comments
Glyma09g37010 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g49670 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g261700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g49670
Coding sequences of Glyma18g49670
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g49670.2 sequence type=CDS gene model=Glyma18g49670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGGACCATCAGGTGTGAGGAAAGGCGCATGGACTAAATGTGAAGACGACCTTCTCAGAGCTTGCGTGCAACTTTATGGAGAAGGAAAATGGCACCTTGTTCCCCAAAGAGCAGGGTTGAACAGATGCCGCAAGAGTCGTAGATTGAGATGGCTGAACTATCTAAAACCAAATATTAAGAGGGGAGATTTGAGTGAAGATGAGGTTGACATGATGATCAGAATGCATAAGCTTTTGGGAAACAGATGGTCCCTGATTGCAGGTAGACTTCCAAGAAGAACTTCAAATGATGTGAAGAATTACTGGAACACCTACATGCGCCGTAAAGTATACTCTCACAAGAAAGACAACAACGTAGAGAAGCAAGCTGAGGCCAAATCAACAGTGAAACATCACGAAGTGATAAAGCCTGTTCCTCGAACTCTATCAAAAACATCCCCATGGTTGCAAGGGAAATTTTTTAATAGTTCCAAAGTTGGTGCTAGTGGAGAAGGTGCAACTTCTATATCAGGGTCTGGGAATTGGTGGGAAACTTTGTTAGATGACAAGGAAGACAATGAAGAGCTTGACCTTTGGGATGAGGAGCTTAATCCAATTGCTTGTGACTTTCTTGCTGAAGGTGAAAATTGGAGTGAGTTTCTTCTTGACCTATAG
Predicted protein sequences of Glyma18g49670
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g49670.2 sequence type=predicted peptide gene model=Glyma18g49670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEGPSGVRKGAWTKCEDDLLRACVQLYGEGKWHLVPQRAGLNRCRKSRRLRWLNYLKPNIKRGDLSEDEVDMMIRMHKLLGNRWSLIAGRLPRRTSNDVKNYWNTYMRRKVYSHKKDNNVEKQAEAKSTVKHHEVIKPVPRTLSKTSPWLQGKFFNSSKVGASGEGATSISGSGNWWETLLDDKEDNEELDLWDEELNPIACDFLAEGENWSEFLLDL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
