Glyma18g49660 - SoyBase

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Report for Sequence Feature Glyma18g49660

Feature Type:	gene_model
Chromosome:	Gm18
Start:	59028673
stop:	59033757
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01120	AT	Annotation by Michelle Graham. TAIR10: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein \| chr3:39234-41865 REVERSE LENGTH=563	SoyBase	E_val: 0	ISS
GO:0001887	GO-bp	Annotation by Michelle Graham. GO Biological Process: selenium compound metabolic process	SoyBase	N/A	ISS
GO:0006520	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process	SoyBase	N/A	ISS
GO:0006730	GO-bp	Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003962	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cystathionine gamma-synthase activity	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
KOG0053	KOG	Cystathionine beta-lyases/cystathionine gamma-synthases	JGI		ISS
PTHR11808	Panther	CYSTEINE/METHIONINE METABOLISM PYRIDOXAL-5-PHOSPHATE ENZYMES	JGI		ISS
PTHR11808:SF14	Panther	SERINE--PYRUVATE AMINOTRANSFERASE	JGI		ISS
PF01053	PFAM	Cys/Met metabolism PLP-dependent enzyme	JGI		ISS
UniRef100_I1N4F6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N4F6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9XFG0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cystathionine-gamma-synthase n=1 Tax=Glycine max RepID=Q9XFG0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g49660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49660

Paralog	Evidence	Comments
Glyma09g37020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g261600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g49660

Limit To All Plant Sequences

>Glyma18g49660.2   sequence type=transcript   gene model=Glyma18g49660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTATACTCATACTCTTATATAAAGGGCTTGAAGGACCCCATCGCAAATCGAAGAGTACAGAGAGATTCGTTTTGGTAGGTATATAGATAGAGGAGAGAGAAACCAAACACAAATCCTTGAAACGACGACGGAAATGGCCGTTTCGAGCTCGCACATGCGTTTCACCTTCGAGTGCCGCTCCGATCCCGATTTCTCGCCACCGCCGCCGTCCTTCGACAACCTCCGCCGCCGTAACTTCCGCTCCTCCGCCGGATCCGGCGCGGCGTTTCACGGCATCTCCTCCCTCATCCTCCGATTCCCTCCCAACTTCCAGCGCCAGCTCAGCACCAAGGCGCGCCGCAATTGTAGCAACATCGGCGTCGCGCAAATTGTCGCCGCTTCGTGGTCGAACAACAGCGACAACTCTCCGGCCGCCGGGGCTCCGGCGCCGCCCGCGGCCACAGCAGCGGACGCCGCCACGGTGCCTCTCCCCGTCGACCTCGCCGCCGCCGAGGACGTCGTCGTCTCTGCCGCGGCCGCCGAGAACGGGACTGTACAGTTAAACAGTAGTTCTTATTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGCTGAACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTTCAAGGAGAATCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCCAACGACTGTGGTTCTGGAGGAGAAGATAAGTATATTGGAGGGGGCTGAATCAACTGTGATAATGGCATCTGGAATGTGTGCTAGCGTAGTCCTATTTATGGCACTGGTTCCAGCTGGTGGACATCTTGTGACCACTACGGATTGTTACAGGAAGACTAGAATATTCATTGAGACTTTTCTTCCAAAGATGGGGATCACGACCACTGTAATTGATCCAGCAGATGTTGGAGCCTTGGAATCTGCATTGGAGCAGCACAATGTGTCTCTATTCTTCACTGAGTCGCCTACCAATCCATTCCTGAGATGTGTTGACATTAAGCTGGTTTCAGAGCTTTGCCACAAGAAGGGGACTTTGCTCTGTATTGATGGTACATTTGCAACACCATTGAACCAGAAGGCCCTTGCCCTTGGCGCTGATCTGATTCTGCACTCCTTAACAAAATACATGGGTGGACATCATGATGCCCTTGGTGGTTGCATAAGTGGTTCAACTAAGGTGGTTTCGCAAATTCGGACTTTGCACCATGTTTTGGGTGGTACACTTAACCCGAATGCTGCATACCTATTCATCAGAGGCATGAAAACGCTGCATCTCCGTGTACAGCAGCAGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAGGTATCATGGCATTTTGACATGCACACTGTCATGCCTCGTCTCCATGCTATTTAATATAATTTATTATTTTGTTAATTGAAACTTTTAAAGTTGTCAAATGAGATTGTGTATAATTCAATTGAATTCAAATATATAAAAAATGAAATGAATGGTTAACACATGACTTGTTTCTTCATCGACAGCTTATTTTTGTTGCTGATCTGTCTTTTAAACTTTTTTTCCCCTATGTATATTTGTGTATAATGATGGTTGAATTGGGGTTCTACGCAAAAATGAAGTGTATGGTTAAATGTCATATCTTGTTCATCAACAGCATACTTATGTTGGAATATTGTGCACTGCTCCCTATGTACTCTAAAATGTATGTGGTTGTAGCATGATGGATAATGTTTACTAAGCTGTGCCAAGAGAGCAGATGCTGGTTTCTTTTGAATTTTTTTTGTTGTGATGCTCTTAAATGGGAGTCCCTTCATCTGCTATTATCTTGTATATTAATGATAATAAGTAATTAAGTATTATTACTTTTTTGATAGTAGCTTTTAGGATGGAAGCCTAAGTATTTTTGTGGCATAAAATTTCTCTTGAAACAAAACTGTATTCTTCTCTAGGTTCTTCCTTTTTTTTTCCACTTTTTGAATTGTCAAATCAGTTGTTTGTATCTTTTCTCTTCTTTTTGATGTCATTAACAAAGGCATATTCTTATACCATTTTATCATTTTACAGATTCAGTATGTAAACATTTTCATGATTGAGTCCTGTATCTGATGTGGCTTTAATTACATACTATTATTGGCAGGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTTGCCAAGAGGCAGATGACTGGTTTCGGTGGTGTTGTCAGTTTTGAGATTGATGGAGATCTACATACCACAATAAAGTTTATTGATTCACTGAAAATCCCTTATATTGCGGCCTCGTTTGGTGGCTGTGAGAGCATTGTGGATCAACCTGCTATTTTGTCTTACTGGGATCTTCCTCAGTCAGAAAGGGCCAAGTATAAGATTTATGACAACCTGGTTCGCTTCAGCTTTGGAGTTGAAGATTTTGAGGATTTGAAGGCTGATGTCCTGCAAGCTCTGGAAGCTATATAGACAGTTTTCCTGATTCACCCATGTTTTTTTTCTTTTAATAATCGTGTTATATGTTCCTTTTCGTTATCGCATCTGGCGATTCAATTGAATTTTGATCGTCTAATGTTCTGTTGGAATTGTGTTTAGATGAATGGTTTCTAATTTGGATGTTGTGAAACTTGTGATGAATGGTTGAAATTGAAACCTCTATTGATATTCATTCCCGCGTTTCCTACAAAAATTAAAAGAAAAATGAATTCTTGAGGCAGGATATATAAGAGAATTTCTTT

Coding sequences of Glyma18g49660

Limit To All Plant Sequences

>Glyma18g49660.1   sequence type=CDS   gene model=Glyma18g49660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGTTTCGAGCTCGCACATGCGTTTCACCTTCGAGTGCCGCTCCGATCCCGATTTCTCGCCACCGCCGCCGTCCTTCGACAACCTCCGCCGCCGTAACTTCCGCTCCTCCGCCGGATCCGGCGCGGCGTTTCACGGCATCTCCTCCCTCATCCTCCGATTCCCTCCCAACTTCCAGCGCCAGCTCAGCACCAAGGCGCGCCGCAATTGTAGCAACATCGGCGTCGCGCAAATTGTCGCCGCTTCGTGGTCGAACAACAGCGACAACTCTCCGGCCGCCGGGGCTCCGGCGCCGCCCGCGGCCACAGCAGCGGACGCCGCCACGGTGCCTCTCCCCGTCGACCTCGCCGCCGCCGAGGACGTCGTCGTCTCTGCCGCGGCCGCCGAGAACGGGACTGTACAGTTAAACAGTAGTTCTTATTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGCTGAACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTTCAAGGAGAATCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCCAACGACTGTGGTTCTGGAGGAGAAGATAAGTATATTGGAGGGGGCTGAATCAACTGTGATAATGGCATCTGGAATGTGTGCTAGCGTAGTCCTATTTATGGCACTGGTTCCAGCTGGTGGACATCTTGTGACCACTACGGATTGTTACAGGAAGACTAGAATATTCATTGAGACTTTTCTTCCAAAGATGGGGATCACGACCACTGTAATTGATCCAGCAGATGTTGGAGCCTTGGAATCTGCATTGGAGCAGCACAATGTGTCTCTATTCTTCACTGAGTCGCCTACCAATCCATTCCTGAGATGTGTTGACATTAAGCTGGTTTCAGAGCTTTGCCACAAGAAGGGGACTTTGCTCTGTATTGATGGTACATTTGCAACACCATTGAACCAGAAGGCCCTTGCCCTTGGCGCTGATCTGATTCTGCACTCCTTAACAAAATACATGGGTGGACATCATGATGCCCTTGGTGGTTGCATAAGTGGTTCAACTAAGGTGGTTTCGCAAATTCGGACTTTGCACCATGTTTTGGGTGGTACACTTAACCCGAATGCTGCATACCTATTCATCAGAGGCATGAAAACGCTGCATCTCCGTGTACAGCAGCAGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAGGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTTGCCAAGAGGCAGATGACTGGTTTCGGTGGTGTTGTCAGTTTTGAGATTGATGGAGATCTACATACCACAATAAAGTTTATTGATTCACTGAAAATCCCTTATATTGCGGCCTCGTTTGGTGGCTGTGAGAGCATTGTGGATCAACCTGCTATTTTGTCTTACTGGGATCTTCCTCAGTCAGAAAGGGCCAAGTATAAGATTTATGACAACCTGGTTCGCTTCAGCTTTGGAGTTGAAGATTTTGAGGATTTGAAGGCTGATGTCCTGCAAGCTCTGGAAGCTATATAG

>Glyma18g49660.2   sequence type=CDS   gene model=Glyma18g49660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGTTTCGAGCTCGCACATGCGTTTCACCTTCGAGTGCCGCTCCGATCCCGATTTCTCGCCACCGCCGCCGTCCTTCGACAACCTCCGCCGCCGTAACTTCCGCTCCTCCGCCGGATCCGGCGCGGCGTTTCACGGCATCTCCTCCCTCATCCTCCGATTCCCTCCCAACTTCCAGCGCCAGCTCAGCACCAAGGCGCGCCGCAATTGTAGCAACATCGGCGTCGCGCAAATTGTCGCCGCTTCGTGGTCGAACAACAGCGACAACTCTCCGGCCGCCGGGGCTCCGGCGCCGCCCGCGGCCACAGCAGCGGACGCCGCCACGGTGCCTCTCCCCGTCGACCTCGCCGCCGCCGAGGACGTCGTCGTCTCTGCCGCGGCCGCCGAGAACGGGACTGTACAGTTAAACAGTAGTTCTTATTCATTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGCTGAACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTTCAAGGAGAATCGTCAAGTGAGTTATGAATACGGGCGCTATGGAAACCCAACGACTGTGGTTCTGGAGGAGAAGATAAGTATATTGGAGGGGGCTGAATCAACTGTGATAATGGCATCTGGAATGTGTGCTAGCGTAGTCCTATTTATGGCACTGGTTCCAGCTGGTGGACATCTTGTGACCACTACGGATTGTTACAGGAAGACTAGAATATTCATTGAGACTTTTCTTCCAAAGATGGGGATCACGACCACTGTAATTGATCCAGCAGATGTTGGAGCCTTGGAATCTGCATTGGAGCAGCACAATGTGTCTCTATTCTTCACTGAGTCGCCTACCAATCCATTCCTGAGATGTGTTGACATTAAGCTGGTTTCAGAGCTTTGCCACAAGAAGGGGACTTTGCTCTGTATTGATGGTACATTTGCAACACCATTGAACCAGAAGGCCCTTGCCCTTGGCGCTGATCTGATTCTGCACTCCTTAACAAAATACATGGGTGGACATCATGATGCCCTTGGTGGTTGCATAAGTGGTTCAACTAAGGTGGTTTCGCAAATTCGGACTTTGCACCATGTTTTGGGTGGTACACTTAACCCGAATGCTGCATACCTATTCATCAGAGGCATGAAAACGCTGCATCTCCGTGTACAGCAGCAGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAGGTATCATGGCATTTTGACATGCACACTGTCATGCCTCGTCTCCATGCTATTTAA

Predicted protein sequences of Glyma18g49660

Limit To All Plant Sequences

>Glyma18g49660.1   sequence type=predicted peptide   gene model=Glyma18g49660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSSSHMRFTFECRSDPDFSPPPPSFDNLRRRNFRSSAGSGAAFHGISSLILRFPPNFQRQLSTKARRNCSNIGVAQIVAASWSNNSDNSPAAGAPAPPAATAADAATVPLPVDLAAAEDVVVSAAAAENGTVQLNSSSYSFLKSDASKTIHAAERLGRGIETDGITTPVLNTSAYFFKKTADLIDFKENRQVSYEYGRYGNPTTVVLEEKISILEGAESTVIMASGMCASVVLFMALVPAGGHLVTTTDCYRKTRIFIETFLPKMGITTTVIDPADVGALESALEQHNVSLFFTESPTNPFLRCVDIKLVSELCHKKGTLLCIDGTFATPLNQKALALGADLILHSLTKYMGGHHDALGGCISGSTKVVSQIRTLHHVLGGTLNPNAAYLFIRGMKTLHLRVQQQNSTGMRMAELLEAHPKVKRVYYPGLPSHPEHELAKRQMTGFGGVVSFEIDGDLHTTIKFIDSLKIPYIAASFGGCESIVDQPAILSYWDLPQSERAKYKIYDNLVRFSFGVEDFEDLKADVLQALEAI*

>Glyma18g49660.2   sequence type=predicted peptide   gene model=Glyma18g49660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSSSHMRFTFECRSDPDFSPPPPSFDNLRRRNFRSSAGSGAAFHGISSLILRFPPNFQRQLSTKARRNCSNIGVAQIVAASWSNNSDNSPAAGAPAPPAATAADAATVPLPVDLAAAEDVVVSAAAAENGTVQLNSSSYSFLKSDASKTIHAAERLGRGIETDGITTPVLNTSAYFFKKTADLIDFKENRQVSYEYGRYGNPTTVVLEEKISILEGAESTVIMASGMCASVVLFMALVPAGGHLVTTTDCYRKTRIFIETFLPKMGITTTVIDPADVGALESALEQHNVSLFFTESPTNPFLRCVDIKLVSELCHKKGTLLCIDGTFATPLNQKALALGADLILHSLTKYMGGHHDALGGCISGSTKVVSQIRTLHHVLGGTLNPNAAYLFIRGMKTLHLRVQQQNSTGMRMAELLEAHPKVSWHFDMHTVMPRLHAI*

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