Glyma18g49570 - SoyBase

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Report for Sequence Feature Glyma18g49570

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58946534
stop:	58948991
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G69530	AT	Annotation by Michelle Graham. TAIR10: expansin A1 \| chr1:26142034-26143051 FORWARD LENGTH=250	SoyBase	E_val: 3.00E-139	ISS
GO:0006949	GO-bp	Annotation by Michelle Graham. GO Biological Process: syncytium formation	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0009828	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall loosening	SoyBase	N/A	ISS
GO:0010114	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red light	SoyBase	N/A	ISS
GO:0010119	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
PF01357	PFAM	Pollen allergen	JGI		ISS
PF03330	PFAM	Rare lipoprotein A (RlpA)-like double-psi beta-barrel	JGI		ISS
UniRef100_G7L212	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alpha-expansin n=2 Tax=Medicago truncatula RepID=G7L212_MEDTR	SoyBase	E_val: 1.00E-157	ISS
UniRef100_I1N4F0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N4F0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g49570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49570

Paralog	Evidence	Comments
Glyma09g37090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g260900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g49570

Limit To All Plant Sequences

>Glyma18g49570.2   sequence type=transcript   gene model=Glyma18g49570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAGTTCTTCAGCTAGCTATAGCTAGCTAGCTAATAAGAATTTATTGCATAATCCACACATTGCTGAATTTTTCATACTCCCATGTTATTTGCATTTATGTAGGAAAATGGCTCTTCTTGGATTTCTTCTGGGACTTTTCTACATGATCTCACATGTCAAGGGGTATGGTTTTGGAGGTTGGACCAATGCACATGCCACCTTCTATGGAGGGGGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGTTATGGAAATCTGTATAGCCAAGGTTATGGAACTGATACAACAGCACTGAGCACTGCACTGTTCAACAATGGCTTAAGCTGTGGTGCATGCTTTCAAATTAAATGTGCGAATGACCCACAATGGTGCCTTCCTGGCTCCATCATAGTCACTGCCACAAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCCAATCACCACTTTGATCTTTCTCAACCTGTTTTCCAGCACATTGCTCAATATAGGGCTGGGATTGTGCCTGTAGTTTACAGAAGGGTGAGGTGCAGGAGAAAAGGTGGAATCAGGTTCACCATCAATGGCCACTCTTACTTCAATTTAGTCCTTGTAACCAATGTTGGAGGGGCTGGTGATGTGCATGCTGTGTCCATCAAAGGTTCAAGAACTAGATGGCAAGCCATGTCAAGGAACTGGGGGCAAAACTGGCAAAGCAACTCCTACTTGAATGGTCAGAGTCTTTCCTTTGTAGTCACCACCAGCAATGGACACAGTGTGGTGTCATACAATGTTGCCCCAGCTGGTTGGTCCTTTGGGCAGACCTACACTGGGAGGCAGTTCAACTACTAACTAACCCTTAATTATCTTTTCAATAATGTTTTAGTAATATTATATCATCTCAAGATTACAAATCAAAGAACCAAGCTATATATAGTTGAGTATTGTAGATGGATTAGTGTTGTGGGCTAGATAGAAGATGATTTAGCCCCCTTTTATTTATATATAAATATATTTAATTTGATTTATATGTAGCAAGCATTTGCATATGATGTGCTGGCTTAATTTATGCTATGCCTCAGCAAATGGGATACTTGCTCTGTACGTTGAGAAAGATAAATTGTAGAAAAGATTGTTGAACCGTTGAATGTAAGCTCTTGTACTTTAGTTATTGATGAATGAATGAGTGAGAAAGGTGATGCTTCAATTGAGTAATAAAAAAGTTGACCCTGACTTCACTTGCATTCCTAAAAGTGCAGTGGACAAAATGAGTGATTCAGATAGTTCCTCTGATCTCTCGTGAACCTAATGTAATTCTTTAGGTTAAGTTTAATTGAGCAAGTAAAGAAAAAAAATATATTGTTCAATGTTCATCATTACCCCTTTCTCTTGCATGTATAAAGCCATTCTGGCAGCTTTTGTACTTTTCTTTCTTTTCATTTGTCTTTCTTGCTTTTTGGCAATCTGGTCACATTCTTGAAAATTATTATAAACAATGTTTCGTAGTTAAAAGAAATTTAAATCAGAA

Coding sequences of Glyma18g49570

Limit To All Plant Sequences

>Glyma18g49570.1   sequence type=CDS   gene model=Glyma18g49570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGACTCACATCTATTTATTCCTTCCCAATTTCCTCCTCCATTTCCACAAACAACTTCTTTCAAGGAAAATGGCTCTTCTTGGATTTCTTCTGGGACTTTTCTACATGATCTCACATGTCAAGGGGTATGGTTTTGGAGGTTGGACCAATGCACATGCCACCTTCTATGGAGGGGGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGTTATGGAAATCTGTATAGCCAAGGTTATGGAACTGATACAACAGCACTGAGCACTGCACTGTTCAACAATGGCTTAAGCTGTGGTGCATGCTTTCAAATTAAATGTGCGAATGACCCACAATGGTGCCTTCCTGGCTCCATCATAGTCACTGCCACAAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCCAATCACCACTTTGATCTTTCTCAACCTGTTTTCCAGCACATTGCTCAATATAGGGCTGGGATTGTGCCTGTAGTTTACAGAAGGGTGAGGTGCAGGAGAAAAGGTGGAATCAGGTTCACCATCAATGGCCACTCTTACTTCAATTTAGTCCTTGTAACCAATGTTGGAGGGGCTGGTGATGTGCATGCTGTGTCCATCAAAGGTTCAAGAACTAGATGGCAAGCCATGTCAAGGAACTGGGGGCAAAACTGGCAAAGCAACTCCTACTTGAATGGTCAGAGTCTTTCCTTTGTAGTCACCACCAGCAATGGACACAGTGTGGTGTCATACAATGTTGCCCCAGCTGGTTGGTCCTTTGGGCAGACCTACACTGGGAGGCAGTTCAACTACTAA

>Glyma18g49570.2   sequence type=CDS   gene model=Glyma18g49570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTCTTGGATTTCTTCTGGGACTTTTCTACATGATCTCACATGTCAAGGGGTATGGTTTTGGAGGTTGGACCAATGCACATGCCACCTTCTATGGAGGGGGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGTTATGGAAATCTGTATAGCCAAGGTTATGGAACTGATACAACAGCACTGAGCACTGCACTGTTCAACAATGGCTTAAGCTGTGGTGCATGCTTTCAAATTAAATGTGCGAATGACCCACAATGGTGCCTTCCTGGCTCCATCATAGTCACTGCCACAAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCCAATCACCACTTTGATCTTTCTCAACCTGTTTTCCAGCACATTGCTCAATATAGGGCTGGGATTGTGCCTGTAGTTTACAGAAGGGTGAGGTGCAGGAGAAAAGGTGGAATCAGGTTCACCATCAATGGCCACTCTTACTTCAATTTAGTCCTTGTAACCAATGTTGGAGGGGCTGGTGATGTGCATGCTGTGTCCATCAAAGGTTCAAGAACTAGATGGCAAGCCATGTCAAGGAACTGGGGGCAAAACTGGCAAAGCAACTCCTACTTGAATGGTCAGAGTCTTTCCTTTGTAGTCACCACCAGCAATGGACACAGTGTGGTGTCATACAATGTTGCCCCAGCTGGTTGGTCCTTTGGGCAGACCTACACTGGGAGGCAGTTCAACTACTAA

Predicted protein sequences of Glyma18g49570

Limit To All Plant Sequences

>Glyma18g49570.1   sequence type=predicted peptide   gene model=Glyma18g49570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLTHIYLFLPNFLLHFHKQLLSRKMALLGFLLGLFYMISHVKGYGFGGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTTALSTALFNNGLSCGACFQIKCANDPQWCLPGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVVYRRVRCRRKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVSIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPAGWSFGQTYTGRQFNY*

>Glyma18g49570.2   sequence type=predicted peptide   gene model=Glyma18g49570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALLGFLLGLFYMISHVKGYGFGGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTTALSTALFNNGLSCGACFQIKCANDPQWCLPGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVVYRRVRCRRKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVSIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPAGWSFGQTYTGRQFNY*

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