Glyma18g49540 - SoyBase

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Report for Sequence Feature Glyma18g49540

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58932314
stop:	58933700
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39670	AT	Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein \| chr5:15883270-15883884 FORWARD LENGTH=204	SoyBase	E_val: 7.00E-49	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
PTHR10891	Panther	CALMODULIN	JGI		ISS
PTHR10891:SF137	Panther	CALCIUM-BINDING EF HAND FAMILY PROTEIN	JGI		ISS
PF00036	PFAM	EF hand	JGI		ISS
UniRef100_G7JUB9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding mitochondrial carrier protein SCaMC-1 n=1 Tax=Medicago truncatula RepID=G7JUB9_MEDTR	SoyBase	E_val: 4.00E-70	ISS
UniRef100_I1N4E7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4E7_SOYBN	SoyBase	E_val: 1.00E-147	ISS

Expression Patterns of Glyma18g49540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49540

Paralog	Evidence	Comments
Glyma09g37150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g260700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g49540

Limit To All Plant Sequences

>Glyma18g49540.2   sequence type=transcript   gene model=Glyma18g49540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGGGAAATACATTTATGGTAGAGACAAAATGAAATCATAAAAAGACAAAGAAAAAGCAGGCCAGCATGACACACACCTCTCTCTCAAACGACCGCATCAACCTTAGAAAAAAATCCATACATGCAGGAATAAGGAAACAGGGAAATTTCCTATGATGTTATCAAGAAATGGTAATAGTCATATTCTGGCACTTTCTTTCCAACCATCTCCAAATGAACTTGACAAGCAACTTCCTTCATCTTTCAAAGCTGACCATCCTGGCTGCTTCAATTTTCCAACTTCTGAATTGTATAAAATACCCTCCAAACCCCCTCAAACAACAGCAACAACATTTCTCATCTTCATAGGCTAAATAAGAATAACAACTTAACAAATTTCATTTCACCCCCTTAATATTTGCACATATCTGCAGCAATGGTTATTCTTAGAGAAATTGGCTACCTTATTTCTGATGGGAAGGCATCTCAGAATGATGGTGAGGGCAGAGGAGCAGGTATCAAAACCAGGGGAGTTTAGTCACCAAGAGAATGAGTCAAAGGGCAGCATAGATAGTGAGAATTATCTTGAGAGGGATGAGGTCAAAATGGTGATGGCTAAACTTGGATTTTTTTGCAGCTCAGAAAGTGAGGAACTTCAGGAGAAGTATGGTTCCAAGGAGCTTTCTGAACTGTTTGAGGAGCAGGAGCCAAGTTTGGAGGAGGTGAAGCAGGCTTTTGATGTTTTTGATGAGAACAAAGATGGCTTTATTGATGCTGAGGAGTTGCAGAGAGTTCTTTGCATTTTGGGATTGAAGGAAGCAGCAAAACTTGAGAACTGCCACAAGATGATCAGGATCTTTGATACAAATCAGGATGGAAGAATAGATTTCATTGAATTTGTAAAAATTATGGAAAATCGCTTCCGCTGATTTGTCTGTTCTCTTGTTCGATTTATATAATATATGGGTTAGTTTAATATGTTCCCTGGGTTCTTGCTTCTTCATAGTTTTATCATCAATATTAGAATCTAACATATTGAAGAATAAGTACATTGGAAAGTTGTAACTGTTGACCGCCCTAAAAAACTCTGATTGAAATGCTTTCTATGAGCTTAAAATCGATTAATAGAACATAGCAAAGAAAAATATATATAAAGATGAAGAAAGTTCGGAAGAAACATTGAAAAGACAGTACTGTGAGATGAACAAATTTCTTCTAACAGTCACAATTTCTCATGAAGTTCTGAATAAAAGAATCAAAGCTATCTATTTTAATTC

Coding sequences of Glyma18g49540

Limit To All Plant Sequences

>Glyma18g49540.1   sequence type=CDS   gene model=Glyma18g49540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTATTCTTAGAGAAATTGGCTACCTTATTTCTGATGGGAAGGCATCTCAGAATGATGGTAACTCAACTTCTCCCTTGTTTGGTCTGGTAGATCTTTCCTTGTACTATACATGTTTCTACAATCTCCAGAGTTTTTTCCTTAGTTTCTGGTGTTTCCTTCTGTACCAACTTTTTCCTAATGACTCAAAGGTGAGGGCAGAGGAGCAGGTATCAAAACCAGGGGAGTTTAGTCACCAAGAGAATGAGTCAAAGGGCAGCATAGATAGTGAGAATTATCTTGAGAGGGATGAGGTCAAAATGGTGATGGCTAAACTTGGATTTTTTTGCAGCTCAGAAAGTGAGGAACTTCAGGAGAAGTATGGTTCCAAGGAGCTTTCTGAACTGTTTGAGGAGCAGGAGCCAAGTTTGGAGGAGGTGAAGCAGGCTTTTGATGTTTTTGATGAGAACAAAGATGGCTTTATTGATGCTGAGGAGTTGCAGAGAGTTCTTTGCATTTTGGGATTGAAGGAAGCAGCAAAACTTGAGAACTGCCACAAGATGATCAGGATCTTTGATACAAATCAGGATGGAAGAATAGATTTCATTGAATTTGTAAAAATTATGGAAAATCGCTTCCGCTGA

>Glyma18g49540.2   sequence type=CDS   gene model=Glyma18g49540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGGCATCTCAGAATGATGGTGAGGGCAGAGGAGCAGGTATCAAAACCAGGGGAGTTTAGTCACCAAGAGAATGAGTCAAAGGGCAGCATAGATAGTGAGAATTATCTTGAGAGGGATGAGGTCAAAATGGTGATGGCTAAACTTGGATTTTTTTGCAGCTCAGAAAGTGAGGAACTTCAGGAGAAGTATGGTTCCAAGGAGCTTTCTGAACTGTTTGAGGAGCAGGAGCCAAGTTTGGAGGAGGTGAAGCAGGCTTTTGATGTTTTTGATGAGAACAAAGATGGCTTTATTGATGCTGAGGAGTTGCAGAGAGTTCTTTGCATTTTGGGATTGAAGGAAGCAGCAAAACTTGAGAACTGCCACAAGATGATCAGGATCTTTGATACAAATCAGGATGGAAGAATAGATTTCATTGAATTTGTAAAAATTATGGAAAATCGCTTCCGCTGA

Predicted protein sequences of Glyma18g49540

Limit To All Plant Sequences

>Glyma18g49540.1   sequence type=predicted peptide   gene model=Glyma18g49540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVILREIGYLISDGKASQNDGNSTSPLFGLVDLSLYYTCFYNLQSFFLSFWCFLLYQLFPNDSKVRAEEQVSKPGEFSHQENESKGSIDSENYLERDEVKMVMAKLGFFCSSESEELQEKYGSKELSELFEEQEPSLEEVKQAFDVFDENKDGFIDAEELQRVLCILGLKEAAKLENCHKMIRIFDTNQDGRIDFIEFVKIMENRFR*

>Glyma18g49540.2   sequence type=predicted peptide   gene model=Glyma18g49540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRHLRMMVRAEEQVSKPGEFSHQENESKGSIDSENYLERDEVKMVMAKLGFFCSSESEELQEKYGSKELSELFEEQEPSLEEVKQAFDVFDENKDGFIDAEELQRVLCILGLKEAAKLENCHKMIRIFDTNQDGRIDFIEFVKIMENRFR*

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