Glyma18g49520 - SoyBase

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Report for Sequence Feature Glyma18g49520

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58916821
stop:	58920915
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39660	AT	Annotation by Michelle Graham. TAIR10: cycling DOF factor 2 \| chr5:15878920-15880712 FORWARD LENGTH=457	SoyBase	E_val: 2.00E-115	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF02701	PFAM	Dof domain, zinc finger	JGI		ISS
UniRef100_G7L202	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dof zinc finger protein n=1 Tax=Medicago truncatula RepID=G7L202_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N4E5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4E5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g49520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49520

Paralog	Evidence	Comments
Glyma09g37170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g260500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g49520

Limit To All Plant Sequences

>Glyma18g49520.1   sequence type=CDS   gene model=Glyma18g49520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGAGGTAAAAGACCCGGCGATCAAGCTCTTCGGGAAGACGATCCCCGTGCCGGAGATTCCTCGGGGATCCGCCGGAGCTCCGGCGTCGTCTTCCGGTGACGTTGTTGATGACAGTGTTGACGCTTCTTCCACCAACTCTTCAAGGGAGTCTCATACCAAGAGAGATGCACTAGGGAAAGATGTTGATAAGGACACATTGGGAGAAAAACCAACTGATGACAAGAAGGAAGATGGAGCCCCCACCCAATCATCAGAAGAGGTCACCAATCTTGATACTGCCTCTGGAAGCTGTGAAGAATCTGTTGCTCTGTCCACCGAGAGGGAGGCTACTACATTGAAAACTACGAAGACTGAAGAAGAACAGAGTGAGACAAGTAATTCACAGGATAAGAACCTCAAAAAACCAGACAAAATACTACCTTGTCCTCGCTGTAATAGCATGGACACCAAGTTCTGCTACTACAATAATTATAATGTCAACCAACCCCGTCACTTCTGCAAGAATTGCCAGAGATACTGGACTGCTGGGGGAACCATGAGGAATGTTCCTGTAGGTGCTGGTCGCAGGAAGAACAAGAGCTCGGCTTCTCACTATCGTCAGATTACTGTTTCTGAAGCAGCACTCCAGAATCCTAGAACAGACTTGCCAAATGGAGCATATCATCCTTCCTTGAAGTGCAATGGTACAGTACTTACATTTGGAACTGATACACCCTTGTGTGAATCAATGGCATCTGTTTTGAACCTTGCTGATAAAACCATGCCCAATTACACAAGAAATGGATTTCATAAACCTGAGGAACTAAGAATTCCTGTTCCCCATGCCAGTGGAGAAAAAGGGGACGATCAATCTAATAAATCTTCAGTTACCTCCACAACGTCTGTAGAAGGTGCAATCACCAATGGACCCAAAGAACAAGTTGTGCAGAATTGCCAGAGCTTTCCACCACAGGTTCCCTACTTTCCAGGGACCCCTTGGCCTATCCCTTGGAATCCAGTGCAGTGGAGTTCTCCAGTACCACCGCCTGCTTTTTGTCCACCCGGATTTACCATGCCATTCTATCCTGCAACAGCTTATTGGGGTTGTGCTGTGCCAGGCACTTGGAACATCCCATGGCTAGTGCAACCATCATCACCAAATGGTGCAACACCTAACTCTGGCCCCAACTCCCCAACCTTGGGTAAACATTCAAGAGAAGACAGCACATTCAAATCAAATGAGTCAGGTGGTGAGGATGGACACAGCAAAGAAAACAACAAAGAAAAGAGCCTGTGGGTTCCAAAAACTTTGAGGATTGATGACTCAGAAGCGGCAAAAAGCTCTATATGGGCAACACTGGGGATTAAAAATGACAAGGCTGACTCAGTTCCTGGGGGAACTCTCTTTAAAGCCTTCCCTTCAAAGCATGATGACAAAAACCATTCAATGCAAGCCTCGCCAGTCTTGCAGGCCAATCCAGCAGCATTGTCTAGGTCACTTAACTTTCATGAGACCTCATAA

Predicted protein sequences of Glyma18g49520

Limit To All Plant Sequences

>Glyma18g49520.1   sequence type=predicted peptide   gene model=Glyma18g49520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEVKDPAIKLFGKTIPVPEIPRGSAGAPASSSGDVVDDSVDASSTNSSRESHTKRDALGKDVDKDTLGEKPTDDKKEDGAPTQSSEEVTNLDTASGSCEESVALSTEREATTLKTTKTEEEQSETSNSQDKNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSASHYRQITVSEAALQNPRTDLPNGAYHPSLKCNGTVLTFGTDTPLCESMASVLNLADKTMPNYTRNGFHKPEELRIPVPHASGEKGDDQSNKSSVTSTTSVEGAITNGPKEQVVQNCQSFPPQVPYFPGTPWPIPWNPVQWSSPVPPPAFCPPGFTMPFYPATAYWGCAVPGTWNIPWLVQPSSPNGATPNSGPNSPTLGKHSREDSTFKSNESGGEDGHSKENNKEKSLWVPKTLRIDDSEAAKSSIWATLGIKNDKADSVPGGTLFKAFPSKHDDKNHSMQASPVLQANPAALSRSLNFHETS*

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