Glyma18g49510 - SoyBase

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Report for Sequence Feature Glyma18g49510

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58910214
stop:	58912135
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01170	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L34e superfamily protein \| chr3:58043-58690 FORWARD LENGTH=215	SoyBase	E_val: 7.00E-69	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PTHR10759	Panther	60S RIBOSOMAL PROTEIN L34	JGI		ISS
PTHR10759:SF2	Panther	STRUCTURAL CONSTITUENT OF RIBOSOME	JGI		ISS
UniRef100_B9T0T4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L34, putative n=1 Tax=Ricinus communis RepID=B9T0T4_RICCO	SoyBase	E_val: 9.00E-81	ISS
UniRef100_I1N4E4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4E4_SOYBN	SoyBase	E_val: 2.00E-159	ISS

Expression Patterns of Glyma18g49510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49510

Paralog	Evidence	Comments
Glyma09g37180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g260400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g49510

Limit To All Plant Sequences

>Glyma18g49510.2   sequence type=transcript   gene model=Glyma18g49510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACAAGCTATGCTAATTACTAGTACTAATTACCATCGTTGACCATGCGAGGTTTGACCCCCCGAGTGCTTGCAAGCAAGAAAGAAAGAAGTGGTGGCATCACCAAAACAAACAACCTATCCACTACGCTTCCCTTTGAGAACGAACGAACGAACGAGTCTCGTGTTGCTTAATATTTATACCATTCAGTCATGGCTAGTAGAATTGCTATGATAACAACAAAGACAATGAAGTTGCTCTCTCTGTAACCCCCCAAACCCAAACCTTCATTATCTCAATTCTCACACTCCCATTTCTCCCTTCTCTTATTTATTATTATTACACACATCATCACAATTTGTCAATTTCCCCGAAGAAAAAAAACCCTAAAAAATTTGCTCCTTTGGATCCATCCAGGGGCACACCCCGGATCTCCGATTCTCTAGATCACTCTCAAGTTCTCATCTTTTTCGTTTTTGGCGCAGTGGGTCGTTGTTAAATACATGGTTTCTGATCTGGGTTTGATTTAAGTTGGGGGTTTCTGGGTTTGTGATTGAAATGGCTTATTTCCATAGCTCAATCTCCCTCTGCAACTCCTCCGTTGACCAATACATGGCGAATTCCCTCGATTTCGAGCCGAAATCGAGGCACAGGAAAACCCCCAATTCCCTCCAGTCTCCGCCGTGTCGGCGATCCCGGTCGGCGGTGGTTGACGTTGTGATTTTTGCAGCAGTTATCGCGGCTTTTGGGTTCTTGTTGTTCCCCTATGCTCAAATTTTGGCTAGTGAGAGTGTCAAATTTGGAATTTTGATTGTGAATTTGGTCAAAGAGGAGGTTTCTTTTACCCCTTGGATTTATATGTTCATAGGTGTTAGTGTTACCTTTGCAGCATTGACTACTTGGGTTCTTGTGGCTTGCACAATAAGGAAGTGTGGGAACCCCAATTGCAAGGGTCTCAGGAAGGCTGCAACGTTTGACATTCAGTTGGAGACTGAGGATTGTGTGAAGAATTCACCTTCATTAACTAAGGATGGTGGAGTTAAGAAGGGACTGTTTAAGGTTTTTTGTGATCATCACCGCGAACTCGAGGCCGAGCTTAAGAAGATGGCACCCCCCAATGGAAGGGCTGTTCTTGTCCTCAGAGGAAGGTGTGGCTGTTCTGTTGGTAGGTTGGAGGTTCCGGGACCGAAGAAGAATCGAAAGACCAAGAAGTAGGATACAGAAAAGAAGAAACAAAAAGTCTTATAGGAAGGAGAGGATATTGGATACAGAATGCAGTCTTAAATTGGTAGAGTAGTTGCTTATAGTTATATGGTCATATTTTATTTAAAATTAGGTTGTCTTTCGAATAAATCCCTCCAATTTGGCAATAAGTTGTAAGAAACTATGGATCATACACAGTTTGAGTATTTATACCTGTTTTCAGTTTTTGTGATAAGTGGGCGCCCATGATTAAAGTTACCAATCTTTTGGTAGAGTACAGGTTATGATGGACTGATGGAATAAGTTGTTGTTCTGTTCTTATTGAATTGAACCTTGTTGAGATCCAAGTTTATTATTGTTGTTTTAAAGCATAATTGTTTCGTATAAATTTAATATTTTCTCTTGTGCTTGATTCTTCAGTTCATTGGTGCGCACTTTCTCCATTAATTGTGTGAATTGCTTAATTACATTGTTTGCTGCCCTAGGCTGGCTCTGCTAGAAGAGGTTGCCTGTGATGTGAACCATGGAGTGGATTGCTCAATTACCAAAAATCTTTTACACAGTTGTCTGTAAACTCTGGTTTTCTATTTGAATTCTATTTTTCTTTCTTTTTTTGGAAAATTGAATTCACATATTAAGGGAGCGG

Coding sequences of Glyma18g49510

Limit To All Plant Sequences

>Glyma18g49510.1   sequence type=CDS   gene model=Glyma18g49510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTATTTCCATAGCTCAATCTCCCTCTGCAACTCCTCCGTTGACCAATACATGGCGAATTCCCTCGATTTCGAGCCGAAATCGAGGCACAGGAAAACCCCCAATTCCCTCCAGTCTCCGCCGTGTCGGCGATCCCGGTCGGCGGTGGTTGACGTTGTGATTTTTGCAGCAGTTATCGCGGCTTTTGGGTTCTTGTTGTTCCCCTATGCTCAAATTTTGGCTAGTGAGAGTGTCAAATTTGGAATTTTGATTGTGAATTTGGTCAAAGAGGAGGTTTCTTTTACCCCTTGGATTTATATGTTCATAGGTGTTAGTGTTACCTTTGCAGCATTGACTACTTGGGTTCTTGTGGCTTGCACAATAAGGAAGTGTGGGAACCCCAATTGCAAGGGTCTCAGGAAGGCTGCAACGTTTGACATTCAGTTGGAGACTGAGGATTGTGTGAAGAATTCACCTTCATTAACTAAGGATGGTGGAGTTAAGAAGGGACTGTTTAAGGTTTTTTGTGATCATCACCGCGAACTCGAGGCCGAGCTTAAGAAGATGGCACCCCCCAATGGAAGGGCTGTTCTTGTCCTCAGAGGAAGGTGTGGCTGTTCTGTTGGTAGGTTGGAGGTTCCGGGACCGAAGAAGAATCGAAAGACCAAGAAGTAG

>Glyma18g49510.2   sequence type=CDS   gene model=Glyma18g49510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTATTTCCATAGCTCAATCTCCCTCTGCAACTCCTCCGTTGACCAATACATGGCGAATTCCCTCGATTTCGAGCCGAAATCGAGGCACAGGAAAACCCCCAATTCCCTCCAGTCTCCGCCGTGTCGGCGATCCCGGTCGGCGGTGGTTGACGTTGTGATTTTTGCAGCAGTTATCGCGGCTTTTGGGTTCTTGTTGTTCCCCTATGCTCAAATTTTGGCTAGTGAGAGTGTCAAATTTGGAATTTTGATTGTGAATTTGGTCAAAGAGGAGGTTTCTTTTACCCCTTGGATTTATATGTTCATAGGTGTTAGTGTTACCTTTGCAGCATTGACTACTTGGGTTCTTGTGGCTTGCACAATAAGGAAGTGTGGGAACCCCAATTGCAAGGGTCTCAGGAAGGCTGCAACGTTTGACATTCAGTTGGAGACTGAGGATTGTGTGAAGAATTCACCTTCATTAACTAAGGATGGTGGAGTTAAGAAGGGACTGTTTAAGGTTTTTTGTGATCATCACCGCGAACTCGAGGCCGAGCTTAAGAAGATGGCACCCCCCAATGGAAGGGCTGTTCTTGTCCTCAGAGGAAGGTGTGGCTGTTCTGTTGGTAGGTTGGAGGTTCCGGGACCGAAGAAGAATCGAAAGACCAAGAAGTAG

Predicted protein sequences of Glyma18g49510

Limit To All Plant Sequences

>Glyma18g49510.1   sequence type=predicted peptide   gene model=Glyma18g49510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYFHSSISLCNSSVDQYMANSLDFEPKSRHRKTPNSLQSPPCRRSRSAVVDVVIFAAVIAAFGFLLFPYAQILASESVKFGILIVNLVKEEVSFTPWIYMFIGVSVTFAALTTWVLVACTIRKCGNPNCKGLRKAATFDIQLETEDCVKNSPSLTKDGGVKKGLFKVFCDHHRELEAELKKMAPPNGRAVLVLRGRCGCSVGRLEVPGPKKNRKTKK*

>Glyma18g49510.2   sequence type=predicted peptide   gene model=Glyma18g49510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYFHSSISLCNSSVDQYMANSLDFEPKSRHRKTPNSLQSPPCRRSRSAVVDVVIFAAVIAAFGFLLFPYAQILASESVKFGILIVNLVKEEVSFTPWIYMFIGVSVTFAALTTWVLVACTIRKCGNPNCKGLRKAATFDIQLETEDCVKNSPSLTKDGGVKKGLFKVFCDHHRELEAELKKMAPPNGRAVLVLRGRCGCSVGRLEVPGPKKNRKTKK*

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