Report for Sequence Feature Glyma18g49490
Feature Type: gene_model
Chromosome: Gm18
Start: 58896479
stop: 58902140
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g49490
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G28970 AT
Annotation by Michelle Graham. TAIR10: Domain of unknown function (DUF298) | chr3:10987970-10989782 REVERSE LENGTH=295
SoyBase E_val: 2.00E-90 ISS
GO:0009734 GO-bp
Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR12281 Panther
RP42 RELATED
JGI ISS
PF03556 PFAM
Domain of unknown function (DUF298)
JGI ISS
UniRef100_G7L1Z9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: DCN1-like protein n=1 Tax=Medicago truncatula RepID=G7L1Z9_MEDTR
SoyBase E_val: 5.00E-156 ISS
UniRef100_UPI000233E9D5 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E9D5 related cluster n=1 Tax=unknown RepID=UPI000233E9D5
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g49490
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g49490
Paralog Evidence Comments
Glyma09g37200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g49490 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g260200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g49490
Coding sequences of Glyma18g49490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g49490.1 sequence type=CDS gene model=Glyma18g49490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATGCATCTGGGATCGACATCTTTGAGATTTACCGAAGATACTGTGACATAAAATCAGGACATGCATATATTGGTGGGGAAGAAGGGTACAGGCAAGACAGTGACCTTCAAAAGGCTAAGGTTTCAAGGGAGGCACTCACACAGCTCTCCAAATTGGTTGAGTCTCGTGTTACTACAGGGGTAACAATTTTTGATGAACTTTCAATGCTCATGTCACGGTTGAATTTGAGGGCGGACTTTTCAGAATTCTCGAGGTTCTATGATTTTGTTTTCTTCATGTGTCGCGAAAATGGTCAAAAGAATATTACTGTAAGCAGGGCGGTAAATGCATGGAAATTAGTTCTTGCTGGGAGGTTTTCACTGCTTCATCCATGGTGTGACTTTGTTGAGAAGAATCAACGATACAACATCTTTGAGGATACCTGGCAACAGGTTCTAGCTTTCAGTGGGTTTACGCATGATAGTCTGGATGCATATGATCCTGAAGGTGCTTGGCCTGTTTTAATAGATGATTTTGTTGAGCATGTGCACAGGATGCTAGGATCGTATTATGATAATTCCAACTTACATTGTAACTGTGATGATCCAGAATCTCAGTCATGGGTTTTTGATGACCCCCTTCCTGGACTGACCATTTTTTCTGGTCTAAAGAGGAAGTTACCCGATGACTCGAGCAAAAGTGATGATATGGATTCCAATGACATGATTTTTTCAAACTGTAAAAGAAGTCGAGCTCACGATGCAGAGGATTTGGAGGACAATCCACCAGGGAATACAGCATATGATTGTATGGAAACCAGTAGACAAAATAGTCCATTGTGTTCATCTATGTCCCCATGTGCAGTTGAAGGTTGTCTGTCTAAGGGGTTTGCAGGACTACTCAACTTGTTCCTATGTGTAGTTTGGTAG
Predicted protein sequences of Glyma18g49490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g49490.1 sequence type=predicted peptide gene model=Glyma18g49490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDASGIDIFEIYRRYCDIKSGHAYIGGEEGYRQDSDLQKAKVSREALTQLSKLVESRVTTGVTIFDELSMLMSRLNLRADFSEFSRFYDFVFFMCRENGQKNITVSRAVNAWKLVLAGRFSLLHPWCDFVEKNQRYNIFEDTWQQVLAFSGFTHDSLDAYDPEGAWPVLIDDFVEHVHRMLGSYYDNSNLHCNCDDPESQSWVFDDPLPGLTIFSGLKRKLPDDSSKSDDMDSNDMIFSNCKRSRAHDAEDLEDNPPGNTAYDCMETSRQNSPLCSSMSPCAVEGCLSKGFAGLLNLFLCVVW*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
