Glyma18g49480 - SoyBase

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Report for Sequence Feature Glyma18g49480

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58893259
stop:	58895744
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01180	AT	Annotation by Michelle Graham. TAIR10: starch synthase 2 \| chr3:62456-65678 REVERSE LENGTH=792	SoyBase	E_val: 1.00E-157	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0010021	GO-bp	Annotation by Michelle Graham. GO Biological Process: amylopectin biosynthetic process	SoyBase	N/A	ISS
GO:0010264	GO-bp	Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009011	GO-mf	Annotation by Michelle Graham. GO Molecular Function: starch synthase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PTHR12526	Panther	GLYCOSYLTRANSFERASE	JGI		ISS
PTHR12526:SF17	Panther	STARCH SYNTHASE	JGI		ISS
PF00534	PFAM	Glycosyl transferases group 1	JGI		ISS
PF08323	PFAM	Starch synthase catalytic domain	JGI		ISS
UniRef100_B9VJT1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Starch synthase IIb n=1 Tax=Vigna unguiculata RepID=B9VJT1_VIGUN	SoyBase	E_val: 2.00E-171	ISS
UniRef100_I1N4E1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4E1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g49480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g49480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma18g49480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g49480

Limit To All Plant Sequences

>Glyma18g49480.1   sequence type=CDS   gene model=Glyma18g49480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGGATTGGTCTTCAAAGTCTCAACAGGAGCCGGTGATGATTGCTGACAATCATGAAGAAGATGATGAGAGATTGTCAGATCCAACACCTGATGAACCAGAATCATCCAAGAGGCCACGGAGGAATCCTCAACTCCCAGCTAGATTGCAAGACTGTGTCATGTTTAATGACAATAATCCATCTGATGAAGAGATTATCAATTTTGCTTTATTTGCAGGCTATGGTCCTATTACTTTTGAAGAAGCCTTAAGTTACAAGAATTGGAGAAAGGCGATGGATGATGAGATTCATGCTATAGGAGAGTTGAATGTAAAACTGCCACAAAATGAAGATAAAAGGACTAAAACAAAGGAGAGCTCATATAGGGATGGAAATGTTCCTTGGCACGTTCCATGTGGGGGTGTTTGCTATGGAGATGGAAATTTGGCCTTCATAGAAAATGATTGGCATACTGCATTGCTGCCGGTGTATCTGAAGGCATATTATCGTGACCAGGGTTTGATGCAGTATGCAAGATCAGTTCTTGTGATTCATAACATTGCTCACCAGGGCCGGGGACCTGTTGATGATTTCTTCTTTGTGGATTTACCTGAACACCACAAGGACCTTTTCAAATTCCACATTGGAGGAGACCATTTCAACATCTTTGCAGCTGGTTTAAAGACAGCAGACCGTGTTGTCACCGTTAGTCATGGATATGCATGGGAGCTCAAAACTTCCGAGGGTGGTTGGGGCTTGCATGGGATCATAAATGAGAATGATTGGAAACTGGGGCATTATGGCTACACTAACTACTCCCTTGAGACACTTTCCAGTGGCAAGGCTAAATGTAAAGCAGCATTGCAAAAGGAGCTCGGTTTGCCAATCCACGAGGATGTCCCGAAAGGAATTGATCTCATAGCTAAAGCAATTCCTTGGTTGATGAGTCAGGATGTGCAACTAAAAACATGCTTAGGCAATTTCAAATCTAACACCATGACAAGGATCACTGCAGGTGCAGACATATTGCTCATGCCATCAAGGTTTGAGCCATGTGGATTGAACCAACTCTATGCCATGAACTATGGAACAGTTCCTGTTGTGCATGCTGTTGGTGGACTGAGAGATACTGTGCAGCCTTTTGATCCTTTTAATGAGTCAGGCCTTGGGTGGACATTTGATAGGAATTGCTTATGGACCTATAGGGAGAGAGGAATGACACAAGATCTTAGTTGGGACAATGCTGCTCAGCAGTATGAGGAGGTGCTTCTTGCTGCCAAATACCAATGGTGA

Predicted protein sequences of Glyma18g49480

Limit To All Plant Sequences

>Glyma18g49480.1   sequence type=predicted peptide   gene model=Glyma18g49480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWDWSSKSQQEPVMIADNHEEDDERLSDPTPDEPESSKRPRRNPQLPARLQDCVMFNDNNPSDEEIINFALFAGYGPITFEEALSYKNWRKAMDDEIHAIGELNVKLPQNEDKRTKTKESSYRDGNVPWHVPCGGVCYGDGNLAFIENDWHTALLPVYLKAYYRDQGLMQYARSVLVIHNIAHQGRGPVDDFFFVDLPEHHKDLFKFHIGGDHFNIFAAGLKTADRVVTVSHGYAWELKTSEGGWGLHGIINENDWKLGHYGYTNYSLETLSSGKAKCKAALQKELGLPIHEDVPKGIDLIAKAIPWLMSQDVQLKTCLGNFKSNTMTRITAGADILLMPSRFEPCGLNQLYAMNYGTVPVVHAVGGLRDTVQPFDPFNESGLGWTFDRNCLWTYRERGMTQDLSWDNAAQQYEEVLLAAKYQW*

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