Glyma18g49470 - SoyBase

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Report for Sequence Feature Glyma18g49470

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58881788
stop:	58887598
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G32450	AT	Annotation by Michelle Graham. TAIR10: nitrate transporter 1.5 \| chr1:11715337-11719807 REVERSE LENGTH=614	SoyBase	E_val: 0	ISS
GO:0006598	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process	SoyBase	N/A	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0009734	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0015698	GO-bp	Annotation by Michelle Graham. GO Biological Process: inorganic anion transport	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0042398	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015112	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nitrate transmembrane transporter activity	SoyBase	N/A	ISS
KOG1237	KOG	H+/oligopeptide symporter	JGI		ISS
PTHR11654	Panther	OLIGOPEPTIDE TRANSPORTER-RELATED	JGI		ISS
PTHR11654:SF37	Panther	OLIGOPEPTIDE TRANSPORTER-RELATED	JGI		ISS
PF00854	PFAM	POT family	JGI		ISS
UniRef100_Q2HUR9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TGF-beta receptor, type I/II extracellular region n=1 Tax=Medicago truncatula RepID=Q2HUR9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E9D6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E9D6 related cluster n=1 Tax=unknown RepID=UPI000233E9D6	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g49470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49470

Paralog	Evidence	Comments
Glyma09g37220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g260000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g49470

Limit To All Plant Sequences

>Glyma18g49470.1   sequence type=CDS   gene model=Glyma18g49470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGTTTGTATTTTCTTAGAAAGGACACGATGGAAGAAAAGGTAAATAAGGAGCACCAGGTTTGCACATCGGATGGAGCTATTGATAGCCAGGGTCATCCTGCAGTTCGAGAGAAAACGGGTGACTGGGTTGCTGCAATTTTGATTTTAGTGAATCAAGGGCTTGCTACTTTGGCATTCTTTGGAATTGGAGTGAATTTGGTGTTGTTTTTGACGAGAGTGATGGGTCAAGACAATGCTGAAGCAGCCAACAGTGTGAGCAAGTGGACAGGGACAGTTTACCTCTTCTCTCTTCTTGGAGCCTTCCTTAGTGACTCTTACTGGGGAAGGTACATGACCTGTGCCATCTTCCAGGTCATATTTGTTATTGGTTTGGTGTCATTATCACTATCGTCTTACATATTCCTACTGAAGCCAAGTGGTTGTGGAAATAAAGAGTTACCATGTGGATCACACTCATCATACCAAACGATTTTATTCTATGTTTCCATATACCTAATAGCTCTAGGAAATGGAGGATACCAGCCTAACATTGCTACATTTGGGGCTGATCAATTTGATGAAGGAGATACCAGGGAACAACATTCAAAAATTGTATTTTTCAGCTATTTTTATTTGGCTTTGAACATTGGGTCACTCTTCTCCAACACCATATTGAATTATTTTGAGGATGATGGACTATGGACTTTGGGGTTCTGGGCTTCAGCTGGCTCTGCTGCTCTGGCATTGGTTTTGTTTCTTTGTGGCACACGAAGGTATAGATACTTTAAGCCTAATGGAAACCCTCTTCCTAGATTTTGCCAAGTTTTTGTGGCTGCTACAAGAAAATGGAAGGTCAAGGTGTTACAAGATGATAAACTTTACGAGGTTGATGAATTCTCAACCGATGAAGGGAGAAAAATGCTCCATACTGAAGGATTTAGATTCTTAGACAAAGCAGCATTTATCACATCAAAGAATTTCAAACAAATGGAAGAGAGTAAATGCAGTCCATGGTATCTATCCACTGTGACACAAGTAGAAGAAGTGAAATGCATTCTAAGACTACTCCCAATTTGGCTATGCACCATATTATACTCTGTCGTTTTTGCTCAAATGGCATCACTTTTTGTGGAGCAAGGCGATGCCATGGACACTAGAATATCATCTTTCCACATTCCTCCAGCAAGCATGTCCACCTTTGACATTCTAAGTGTAGCAATTGTCATCTTCATTTATAGGCGAGTTCTCGACCCTCTTGTGGCCAGAACAATGAAATCAAAAGGACTCACTGAACTTCAAAGGATGGGAATTGGTCTAGTCCTAGCAATTATGGCCATGGTTTCAGCAGGATTGGTGGAGCACTTTAGGCTAAAGAATGCAATAGAAGACTGCAATGAATGTAAAGGGTCTAGTTCACTTTCCATATTTTGGCAAGTGCCACAATATGTGTTTGTGGGGGCATCAGAAGTTTTCATGTATGTGGGTCAATTAGAGTTCTTCAATGCACAAACACCTGATGGATTAAAGAGTTTTGGTAGTGCACTTTGCATGACTTCAATATCACTTGGAAACTACGTTAGTAGCTTGCTTGTTGCAATTGTGATGAAGATTTCTGCCACAGATGAGATGCCAGGATGGATCCCAGGAAACTTGAACAAAGGGCATTTGGATATGTTTTACTTCCTCTTAGCAGCACTCACCGCAGCTGATCTTGTAATATATGTACTGATGGCTAGGTGGTATAAATATGTCAAATTTCAAGGAAACAATGAGAATGACACCAACAAAGAAGACCCTGAAGTAGTGTAG

Predicted protein sequences of Glyma18g49470

Limit To All Plant Sequences

>Glyma18g49470.1   sequence type=predicted peptide   gene model=Glyma18g49470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCLYFLRKDTMEEKVNKEHQVCTSDGAIDSQGHPAVREKTGDWVAAILILVNQGLATLAFFGIGVNLVLFLTRVMGQDNAEAANSVSKWTGTVYLFSLLGAFLSDSYWGRYMTCAIFQVIFVIGLVSLSLSSYIFLLKPSGCGNKELPCGSHSSYQTILFYVSIYLIALGNGGYQPNIATFGADQFDEGDTREQHSKIVFFSYFYLALNIGSLFSNTILNYFEDDGLWTLGFWASAGSAALALVLFLCGTRRYRYFKPNGNPLPRFCQVFVAATRKWKVKVLQDDKLYEVDEFSTDEGRKMLHTEGFRFLDKAAFITSKNFKQMEESKCSPWYLSTVTQVEEVKCILRLLPIWLCTILYSVVFAQMASLFVEQGDAMDTRISSFHIPPASMSTFDILSVAIVIFIYRRVLDPLVARTMKSKGLTELQRMGIGLVLAIMAMVSAGLVEHFRLKNAIEDCNECKGSSSLSIFWQVPQYVFVGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSLLVAIVMKISATDEMPGWIPGNLNKGHLDMFYFLLAALTAADLVIYVLMARWYKYVKFQGNNENDTNKEDPEVV*

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