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Report for Sequence Feature Glyma18g49440

Feature Type:gene_model
Chromosome:Gm18
Start:58849490
stop:58854590
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g49440
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15250AT Annotation by Michelle Graham. TAIR10: FTSH protease 6 | chr5:4950411-4952777 REVERSE LENGTH=688 SoyBaseE_val: 0ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0010304GO-bp Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process SoyBaseN/AISS
GO:0030163GO-bp Annotation by Michelle Graham. GO Biological Process: protein catabolic process SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0004176GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP-dependent peptidase activity SoyBaseN/AISS
GO:0004222GO-mf Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008233GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidase activity SoyBaseN/AISS
GO:0008237GO-mf Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
KOG0731 KOG AAA+-type ATPase containing the peptidase M41 domain JGI ISS
PTHR23076Panther METALLOPROTEASE M41 FTSH JGI ISS
PTHR23076:SF34Panther JGI ISS
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI ISS
PF01434PFAM Peptidase family M41 JGI ISS
PF06480PFAM FtsH Extracellular JGI ISS
UniRef100_G7L1Y9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cell division protease ftsH-like protein n=1 Tax=Medicago truncatula RepID=G7L1Y9_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233E9D4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E9D4 related cluster n=1 Tax=unknown RepID=UPI000233E9D4 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g49440
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g49440 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g259700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g49440
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g49440
>Glyma18g49440.1   sequence type=CDS   gene model=Glyma18g49440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCTGCCCTATGTTTCTCAGTCTCCCCCACTTTGATGCACAAGCCTCAAGACCTTTCCAAGGACACACACCTCACAAAAGCCAACAACAAAGACAAATCATGCAAACAATCATTGTTAGATAACAAATTCAGCAAGAGGAAGATTTTATCATCTGCTGTTATTGGGTTGGGCCCAGCATTGGTTGGGCTTTCTACTGCTCAGCCCACAAGAGCTGAGCCAGAAAGCCCAGCTGCTTCCACCTCAAGCAGAATATCATACTCAAGATTCCTGCAGTACTTGGATGAAGGTGCTGTCAAGAAGGTGGACCTCTTTGAGAATGGAACAGTTGCTATTGCAGAGATATACAATCCAACCTTGGAAAAAATCCAAAGGGTCAAAATTCAGTTACCAGGGTTGCCTCAGGAGTTAATAAGGAAAATGAAGGATAAAAATGTTGATTTTGCTGCTTATCCCATGGAAGCTAGTTGGTGGCCTGCAGTACTTGATTTGTTGGGAAATTTGGCTTTTCCTTTGATATTGCTTGGTTCTCTAATCTTGAGGACATCAACTAATAATCCTGCTGGTGGCCCCAACTTGCCCTTTGGATTAGGAAGGAGTAAGGCAAAGTTTGAGATGGAACCAAACACAGGAGTTACATTTGAGGATGTAGCTGGAGTGGATGAAGCCAAGCAAGACTTCCAAGAGATTGTTGAGTTCTTGAAGACCCCAGAGAAGTTTTCTGCAGTTGGAGCAAAAATTCCCAAAGGGGTACTTCTGGTAGGGCCACCAGGGACTGGAAAGACATTGCTGGCCAAGGCAATTGCAGGAGAGGCTGGGGTTCCTTTCTTTTCCCTATCTGGATCAGAGTTCATTGAGATGTTTGTGGGTGTAGGGGCCTCAAGGGTGAGGGATTTGTTTAACAAGGCAAAACAAAATTCTCCTTGTCTGATATTCATTGATGAGATAGATGCTGTAGGGAGGCAGAGAGGTACAGGTATAGGTGGAGGGAATGATGAAAGGGAGCAAACACTGAATCAGTTGCTCACTGAAATGGATGGTTTCACTGGAAACACCGGAGTTATAGTCATTGCTGCCACCAACAGACCTGAAATTCTTGATTCAGCTTTGCTTAGACCTGGGAGGTTTGATAGGCAGGTTACTGTTGGATTACCAGATGTAAGAGGGAGGGAAGAAATATTGAAAGTTCATAGTAACAACAAGAAGCTTGACAAGGATGTCTCTCTTAGTGTCATTGCCATGAGAACTCCCGGATTCAGTGGTGCAGACCTAGCAAACCTCATGAATGAAGCCGCCATTCTTGCCGGTCGAAGGGGCAAAGATAAGATCACAATGAAAGAAGTTGATGACTCCATAGATCGCATTGTGGCAGGCATGGAAGGAACCAAGATGACTGATGGCAAAAGCAAAATTCTGGTGGCTTACCATGAAATTGGACATGCTGTTTGTGCGACACTGACACCAGGGCATGATCCAGTACAGAAAGTCACTCTAGTTCCCAGAGGCCAAGCCCGGGGCTTAACATGGTTCATATCAGGTGAAGATCCATCTCTCATCTCTAAGAAGCAATTATTTGCTAGAATAGTTGGAGGCTTAGGGGGAAGAGCAGCAGAGGAAGTCATATTTGGTGAAACTGAGATAACCACTGGAGCTGCTGGGGACTTGCAACAAGTTACACAAATAGCAAGACAGATGGTAACAGTGTTTGGCATGTCAGAGATTGGACCATGGGCATTGACTGATCCTGCAGTGCAAAGTAGTGATGTGGTGCTACGAATGCTGGCTAGGAACTCAATGTCAGAGAAATTAGCCGAGGACATTGATAACTCAGTGAGCCAGATAATAGAGGCAGCATATGAAATTGCAAAGAATCACATAAGGAATAACCGTGATGCAATTGATAAATTAGTGGATGTGCTACTTGAGAAGGAGACCCTTGGTGGAGATGAATTCAGAGCTATATTGTCAGAATTCACTGATATTTCTTCAATTAAGATAGATAGAATCCCTATTCGGGAATTGATCGAAGCATAA
Predicted protein sequences of Glyma18g49440
>Glyma18g49440.1   sequence type=predicted peptide   gene model=Glyma18g49440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSALCFSVSPTLMHKPQDLSKDTHLTKANNKDKSCKQSLLDNKFSKRKILSSAVIGLGPALVGLSTAQPTRAEPESPAASTSSRISYSRFLQYLDEGAVKKVDLFENGTVAIAEIYNPTLEKIQRVKIQLPGLPQELIRKMKDKNVDFAAYPMEASWWPAVLDLLGNLAFPLILLGSLILRTSTNNPAGGPNLPFGLGRSKAKFEMEPNTGVTFEDVAGVDEAKQDFQEIVEFLKTPEKFSAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKQNSPCLIFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNTGVIVIAATNRPEILDSALLRPGRFDRQVTVGLPDVRGREEILKVHSNNKKLDKDVSLSVIAMRTPGFSGADLANLMNEAAILAGRRGKDKITMKEVDDSIDRIVAGMEGTKMTDGKSKILVAYHEIGHAVCATLTPGHDPVQKVTLVPRGQARGLTWFISGEDPSLISKKQLFARIVGGLGGRAAEEVIFGETEITTGAAGDLQQVTQIARQMVTVFGMSEIGPWALTDPAVQSSDVVLRMLARNSMSEKLAEDIDNSVSQIIEAAYEIAKNHIRNNRDAIDKLVDVLLEKETLGGDEFRAILSEFTDISSIKIDRIPIRELIEA*






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