Glyma18g49410 - SoyBase

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Report for Sequence Feature Glyma18g49410

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58816333
stop:	58821752
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G37820	AT	Annotation by Michelle Graham. TAIR10: NOD26-like intrinsic protein 4;2 \| chr5:15050261-15051542 FORWARD LENGTH=283	SoyBase	E_val: 2.00E-63	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015250	GO-mf	Annotation by Michelle Graham. GO Molecular Function: water channel activity	SoyBase	N/A	ISS
KOG0223	KOG	Aquaporin (major intrinsic protein family)	JGI		ISS
PTHR19139	Panther	AQUAPORIN TRANSPORTER	JGI		ISS
PTHR19139:SF22	Panther	gb def: glycerol uptake facilitator protein [mycoplasma pulmonis]	JGI		ISS
PF00230	PFAM	Major intrinsic protein	JGI		ISS
UniRef100_C6TKR9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TKR9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7L100	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aquaporin NIP2-1 n=1 Tax=Medicago truncatula RepID=G7L100_MEDTR	SoyBase	E_val: 4.00E-123	ISS

Expression Patterns of Glyma18g49410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49410

Paralog	Evidence	Comments
Glyma09g37280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g259500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g49410

Limit To All Plant Sequences

>Glyma18g49410.2   sequence type=transcript   gene model=Glyma18g49410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCATCCACTACTTGTAGCTATTAGCTAACATATAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCACATTTCCTGAGCTATAGGCTATAGCCTTCCATAATCTTATAACAATGGAGGGGACCACCAGCCAAAGCACGTTTACCTTCATCCCTAGCACAATTGAGACACCTAGTCCAAGCATCCCTGAGATTTCATCATCATCACCTTCCCCTGGCGGCTCTCTTGCAAGAGTTGCACAAAGTTACCCTCCTGGATTTCCCAGAAAGGTATTTGCGGAGGTTATAGGGACATTTCTGTTAGTGTTTGTGGGGAGTGGTTCTGCTGGGCTTAGCAAGATTGATGAAAGCATGGTGTCAAAGCTTGGAGCTTCACTTGCAGGAGGACTCATAGTGACAGTCATGATTTACTCAATTGGACACATCTCAGGGGCACACATGAACCCAGCTGTTTCGCTTGCTTTTACCGCCGTGAGGCATCTTCCGTGGCCACAGCTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATACACATTGCGAGAGCTGTTACGGCCATCAGATGAGATTGGGGGAACTTCACCTGCTGGATCACACATTCAAGCCCTAATCATGGAAATGGTGAGCACATACACCATGGTGTTCATTTCCATGGCCGTGGCCACCGACTCAAACGCGACAGGACAGCTATCAGGAGTTGCAGTAGGTTCTTCTGTTTGCATAGCAAGCATTGTAGCCGGGTAAGTTTAGCAAAAAAGAAAAGAAAAATGATCCTCACACACAAACACAATTTTACACCACAGGAATAAATGACCACAGGAAAAAATAAAGTTTAAAAAATGGGAGACTCAAAATTAGGCAAAAACCTATATATATTGAGGAAGCAAAGTAAGAGACATAAACATGCATGAAAAGAAGCCAATGTTTTTTGAAAATTGTTGTTGTGTGCTGTCCATGTATACAGACCAATATCAGGGGGAT

Coding sequences of Glyma18g49410

Limit To All Plant Sequences

>Glyma18g49410.1   sequence type=CDS   gene model=Glyma18g49410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGGACCACCAGCCAAAGCACGTTTACCTTCATCCCTAGCACAATTGAGACACCTAGTCCAAGCATCCCTGAGATTTCATCATCATCACCTTCCCCTGGCGGCTCTCTTGCAAGAGTTGCACAAAGTTACCCTCCTGGATTTCCCAGAAAGGTATTTGCGGAGGTTATAGGGACATTTCTGTTAGTGTTTGTGGGGAGTGGTTCTGCTGGGCTTAGCAAGATTGATGAAAGCATGGTGTCAAAGCTTGGAGCTTCACTTGCAGGAGGACTCATAGTGACAGTCATGATTTACTCAATTGGACACATCTCAGGGGCACACATGAACCCAGCTGTTTCGCTTGCTTTTACCGCCGTGAGGCATCTTCCGTGGCCACAGCTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATACACATTGCGAGAGCTGTTACGGCCATCAGATGAGATTGGGGGAACTTCACCTGCTGGATCACACATTCAAGCCCTAATCATGGAAATGGTGAGCACATACACCATGGTGTTCATTTCCATGGCCGTGGCCACCGACTCAAACGCGACAGGACAGCTATCAGGAGTTGCAGTAGGTTCTTCTGTTTGCATAGCAAGCATTGTAGCCGGACCAATATCAGGGGGATCAATGAACCCAGCAAGGACATTAGGTCCTGCAATTGCAACATCATACTACAAGGGACTTTGGGTATATTTTGTTGGACCGATTACTGGGGCAGTTTTAGCAGCATGGTCTTACAATGTGATTAGGGACACTGAACACCCTGGTTTTCCCATTTCACTATCCTCCATTTCATCCAAGGTGCGCCAAAGCATTGGTGGAACCGAACAAAAAAGCGACCAAAGATGCTTGGTGTGA

>Glyma18g49410.2   sequence type=CDS   gene model=Glyma18g49410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGGACCACCAGCCAAAGCACGTTTACCTTCATCCCTAGCACAATTGAGACACCTAGTCCAAGCATCCCTGAGATTTCATCATCATCACCTTCCCCTGGCGGCTCTCTTGCAAGAGTTGCACAAAGTTACCCTCCTGGATTTCCCAGAAAGGTATTTGCGGAGGTTATAGGGACATTTCTGTTAGTGTTTGTGGGGAGTGGTTCTGCTGGGCTTAGCAAGATTGATGAAAGCATGGTGTCAAAGCTTGGAGCTTCACTTGCAGGAGGACTCATAGTGACAGTCATGATTTACTCAATTGGACACATCTCAGGGGCACACATGAACCCAGCTGTTTCGCTTGCTTTTACCGCCGTGAGGCATCTTCCGTGGCCACAGCTCCCATTTTATGTAGCAGCTCAACTCACTGGAGCCATTTCTGCTTCATACACATTGCGAGAGCTGTTACGGCCATCAGATGAGATTGGGGGAACTTCACCTGCTGGATCACACATTCAAGCCCTAATCATGGAAATGGTGAGCACATACACCATGGTGTTCATTTCCATGGCCGTGGCCACCGACTCAAACGCGACAGGACAGCTATCAGGAGTTGCAGTAGGTTCTTCTGTTTGCATAGCAAGCATTGTAGCCGGGTAA

Predicted protein sequences of Glyma18g49410

Limit To All Plant Sequences

>Glyma18g49410.1   sequence type=predicted peptide   gene model=Glyma18g49410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGTTSQSTFTFIPSTIETPSPSIPEISSSSPSPGGSLARVAQSYPPGFPRKVFAEVIGTFLLVFVGSGSAGLSKIDESMVSKLGASLAGGLIVTVMIYSIGHISGAHMNPAVSLAFTAVRHLPWPQLPFYVAAQLTGAISASYTLRELLRPSDEIGGTSPAGSHIQALIMEMVSTYTMVFISMAVATDSNATGQLSGVAVGSSVCIASIVAGPISGGSMNPARTLGPAIATSYYKGLWVYFVGPITGAVLAAWSYNVIRDTEHPGFPISLSSISSKVRQSIGGTEQKSDQRCLV*

>Glyma18g49410.2   sequence type=predicted peptide   gene model=Glyma18g49410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGTTSQSTFTFIPSTIETPSPSIPEISSSSPSPGGSLARVAQSYPPGFPRKVFAEVIGTFLLVFVGSGSAGLSKIDESMVSKLGASLAGGLIVTVMIYSIGHISGAHMNPAVSLAFTAVRHLPWPQLPFYVAAQLTGAISASYTLRELLRPSDEIGGTSPAGSHIQALIMEMVSTYTMVFISMAVATDSNATGQLSGVAVGSSVCIASIVAG*

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