Glyma18g49390 - SoyBase

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Report for Sequence Feature Glyma18g49390

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58767060
stop:	58768883
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15210	AT	Annotation by Michelle Graham. TAIR10: homeobox protein 30 \| chr5:4937874-4938689 REVERSE LENGTH=271	SoyBase	E_val: 6.00E-77	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF04770	PFAM	ZF-HD protein dimerisation region	JGI		ISS
UniRef100_A2Q1B8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-like n=1 Tax=Medicago truncatula RepID=A2Q1B8_MEDTR	SoyBase	E_val: 2.00E-95	ISS
UniRef100_UPI000233E9D3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E9D3 related cluster n=1 Tax=unknown RepID=UPI000233E9D3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g49390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49390

Paralog	Evidence	Comments
Glyma09g37300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g259300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g49390

Limit To All Plant Sequences

>Glyma18g49390.1   sequence type=CDS   gene model=Glyma18g49390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATAACCCCAACAACAACGATCATCAACACCACCACCACTCCCAGTGCAGCAAAATCCCCGGAACATGAAACAGAAACACCGACCAGGATCACCACCCCCATCACTCCCACAACGACAAAAACCTTATCTTTCTCGAATGGTGTCCTCAAACGCCACCACCACCACCACCTCCACCACCCTATGCCTGCGGTGGTTACCTACAAAGAATGCCTCAAAAACCACGCCGCCAACTTGGGTGGCCTCGCTCTAGACGGCTGCGGCGAGTTCATGCCCTCTCCGACCGCCACCGCCGCCGACCCCAGCTCCATAAAATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGCGAGCCGGAGGACCCCCCCATCACCTCCAACACCACGCACGTCATCGAGTACCAGCCCCACCACCGCCACCACCCTCCTCCGCCGCTTCACGCGGCGGCGGCAGCACGCAGCCCCAATTCCGCTTCCCCGCCGCCGATCTCCTCCTCTTACTATCCCTCCGCGCCGCACATGCTCCTCGCCCTCTCCGCCGGGCTAGCGGCTCCGCCGGAGAGCACCGCAGCGCCTTCCGCCGCGCTCAGCAGAAAGCGTTTCCGAACGAAGTTCAGTCAGGAGCAGAAGGAGAAGATGCACAAGTTCGCGGAGAAAGTGGGGTGGAAGATTCAGAAGCGGGACGAGGATTTGATTCACGAGTTCTGCAACGAGGTTGGGGTCGATAGAAGCGTTCTCAAGGTTTGGATGCATAACAACAAAAACACCTTCGCCAAAAAAGATAACAATATTGTTATTAGTAATGATATTAATATTACTACTAGTAATAATATTAATACCAGTATTATTGATGATAATGATGCAAATGGGGGTGATGTCAAGGTTTTTGAAAACCCTAACAACAACCATGGTAGTGGTAGTGGTGGTGGTGAAGATCCTGCTGAAGATCCGAGTCGTAATCACTATGGTGGGGTGAATGTTGGTGCTAACGGGTCTTCTTCTAGTTCTTGA

Predicted protein sequences of Glyma18g49390

Limit To All Plant Sequences

>Glyma18g49390.1   sequence type=predicted peptide   gene model=Glyma18g49390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDITPTTTIINTTTTPSAAKSPEHETETPTRITTPITPTTTKTLSFSNGVLKRHHHHHLHHPMPAVVTYKECLKNHAANLGGLALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPEDPPITSNTTHVIEYQPHHRHHPPPPLHAAAAARSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPESTAAPSAALSRKRFRTKFSQEQKEKMHKFAEKVGWKIQKRDEDLIHEFCNEVGVDRSVLKVWMHNNKNTFAKKDNNIVISNDINITTSNNINTSIIDDNDANGGDVKVFENPNNNHGSGSGGGEDPAEDPSRNHYGGVNVGANGSSSSS*

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