Glyma18g49360 - SoyBase

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Report for Sequence Feature Glyma18g49360

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58733795
stop:	58736013
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G28910	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 30 \| chr3:10911443-10912856 FORWARD LENGTH=323	SoyBase	E_val: 1.00E-106	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009626	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0042761	GO-bp	Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0048	KOG	Transcription factor, Myb superfamily	JGI		ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_C6T8I3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6T8I3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_E4W6I5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor MYB392 n=1 Tax=Glycine max RepID=E4W6I5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g49360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49360

Paralog	Evidence	Comments
Glyma09g37340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g259100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g49360

Limit To All Plant Sequences

>Glyma18g49360.1   sequence type=CDS   gene model=Glyma18g49360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGACCACCTTGTTGTGACAAAGAAGGGGTCAAGAAAGGGCCTTGGACTCCTGAAGAAGACATCATATTGGTGTCTTATATTCAGGAACATGGTCCTGGAAATTGGAGGGCAGTTCCTGCCAAAACAGGGTTGTCAAGATGCAGCAAGAGTTGCAGACTTAGATGGACTAATTACCTGAGGCCAGGAATCAAACGGGGCAACTTCACAGAACAAGAGGAGAAGATGATAATCCATCTTCAAGATCTTTTAGGAAACAGATGGGCTGCAATAGCTTCATACCTTCCACAGAGAACAGACAATGACATAAAGAACTATTGGAACACCCATTTGAGAAAGAAGCTGAAGAAGATGCAAGTAGGTTGTGAAGGTGGTAGCTTTGGAGAAGGGTTTTCAGCCTCAAGGCAAATCCCTAGAGGCCAGTGGGAAAGAAGGCTCCAAACTGATATCCAAATGGCAAAGAGAGCCCTCAGTGAAGCTCTTTCACCAGAGAAGCCATCTTGTAATTTATCTGCCTCAAACTCAAACCCTTCAGATAGTAGCAGCTCCTTCTCTTCCACAAAACCAACAACAACACAAACTGTGTGCTATGCCTCAAGTGCTGACAACATAGCTAGAATGCTAAAGGGTTGGATGAAAAACCCACCAAAGTCCTCAAGAACAAACTCATCATCTGTGACTCAGAACTCCTTCAACAACTTTGCTGCAGCAGGTGCTGATACTGCTTCTAGTATTGGAGCAAAGGGACCACCAAGCAGTGCTGAATTGTCTGAAAACAATTTTGAATCATTGTTTGATTTTGATCAGTCTTTGGAGTCTTCAAACTCTGATGAATTCTCTCGGTCATTGTCTCCTGAGGCCACTGTTTTGCAAGATGAAAGCAAGCCTGATGTTATTGGTGCAGAAATTATGCCATTCTCTTTGCTTGAGAAATGGCTTCTTGATGAGGCTGGTTGCCAAGAGAAATTAGTTGGTTGTGGTGATGATGCCAAGTTTTTCTAA

Predicted protein sequences of Glyma18g49360

Limit To All Plant Sequences

>Glyma18g49360.1   sequence type=predicted peptide   gene model=Glyma18g49360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPAKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLKKMQVGCEGGSFGEGFSASRQIPRGQWERRLQTDIQMAKRALSEALSPEKPSCNLSASNSNPSDSSSSFSSTKPTTTQTVCYASSADNIARMLKGWMKNPPKSSRTNSSSVTQNSFNNFAAAGADTASSIGAKGPPSSAELSENNFESLFDFDQSLESSNSDEFSRSLSPEATVLQDESKPDVIGAEIMPFSLLEKWLLDEAGCQEKLVGCGDDAKFF*

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