Glyma18g49310 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g49310

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58672741
stop:	58677759
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01210	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr3:72182-73159 FORWARD LENGTH=249	SoyBase	E_val: 7.00E-45	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
PTHR11732	Panther	ALDO/KETO REDUCTASE	JGI		ISS
PTHR11732:SF1	Panther	DIMERIC DIHYDRODIOL DEHYDROGENASE-RELATED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7KZY3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein vip1 n=1 Tax=Medicago truncatula RepID=G7KZY3_MEDTR	SoyBase	E_val: 2.00E-96	ISS
UniRef100_I1N4C4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4C4_SOYBN	SoyBase	E_val: 1.00E-133	ISS

Expression Patterns of Glyma18g49310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49310

Paralog	Evidence	Comments
Glyma09g37380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g258600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g49310

Limit To All Plant Sequences

>Glyma18g49310.2   sequence type=transcript   gene model=Glyma18g49310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTCAAACACTTTTTTCTGGTTCTCACTATAGTTTTCTTCAACCTCTTTTGTTTTGCCACATTGATGTTGTTTTTGAATTGTTTTGTTTGATTTTTTTGTTCTGTCTCTCTCTTGTGGGTCATAACAATTGGTTTTTCTAATGATTTTTATTGATGCTATCAATTTGGCTAAAGGGTGATCCTTCATATCCAAATTCCAAACCCAGTTTGAGATTTTAGAATTTGATTGAGTTGGATTCGTTTTCATTGGTTGTTGGAGTGTGAAGAAATTCTGTCTTCAGTTAATGGACACTCTTCATTCTCAAATGTGATCAATACGATGTTTCCTTGCATGTCAAGAGTTTATAATTGATATGTTTCCTGAAATATTAAATAAAACAATATAAATGATATAGGCATGTGATCTGTGACATAGTTCTGTTTGTTAAAATTGAGGCTGATATCTGTTGGGGACCACTAAATATTTGGAATTTACAATCTCTTGTGGATGAAGTGAATGCAACTAAATGATAGATAATGTTTTCTATAATTTCACTGTTCTGGTTATCTTCTTTGTTTGTTTTTAACAATGCATGGCCTTATTACTGGAGAAATGAAAGGGAAAGGAAAGGCTATTCCCACCATCAGTTTGTGAAGTTGCATGAATGATCCTTATAGGGTCACTCTTTTTCTCTAATAAGTTGTCAAGTTTTTTTCACTTGCTTTGATTTCTGCAGGTTTGCTGACTCTGGTTCTATTTTTTCCAATTTGGGATTGAGTCACTTGACAAGTATGTATAGTGGTGGTTACACTGCTCTAGTTACAAACTTATCCCCAAGAGCAACAGAGGATGATGTGAGAAATTTTTTTACATACTGTGGTTTAATTGAGCATATTGAAATATTAAGATCTGGTGAAAATGCGTCTACTGCATATGTGACTTATCGGGATGCTTATGCCCTGGAAACTGCATTATTGCTAAATGGATCCATGATCTTGGACCAATGTATATTCATTTCACGCTATGAAGCTTATGTAAATGACTATGATAATTGGAGTAGTCATGCATCAAAGCCTGAATACAGTATTACAACCTCACAGGATGTTCACATGGATAAGTTTGTTGGTTCCCCTGGAGAAGCACTAACTATGGCTCAGGTGGTTGTCAAAACAATGGTGGCTAAGGGATATGTGTTGGGCAAAGATGCATTTGTCATGGCAAAAGCTTTTGATGAATCTCACAGTGTATCATCTACAGCAGCATCCAAGGTTGCTGAACTCAGCAATAAAATTGGGTTGACTGATACCATTAATTCAGGCATTGAAACTTTTAAGTCTGTGGATGAGAAGTATCATGTCACAGACTTCACTAAATCAGCTGCAACAGTGACAGGGACAACAGCTATAGTTGTGGCATCAGTTACCGGAAAAGCCGCCGTGGCAGCTGGAACTGCTATAGCCAACAGTAGCTACTTTGCCAAAGGTGCTCTTTGGGTTTCAGATATGCTGACACGTGCAGCGAAAACGGCTGCTGATTTGGGCCAGAATGAAAAGAAATGAAACTCCAAACATGAATTACTGTATAATATGTTAAGTTGTTGAACACAAACAAATAGCAGCATTTGTTTGTTGCTATTGTATTATAAGACGTGAACTTGCTTTACATATGTGGCTACTCATTTGGTGCAAATGTTCATATCAGTAATTTTTGAGAATCCATGGTAAGCAGCCACTTATTTGTGTGTACCCTTTTAGAGAATATAGCATATGGTACAATGTAAGTACCAAGTTTCTTCTTGTCCACTTTCATATTAAATGTGCCTAAAATTATATT

>Glyma18g49310.3   sequence type=transcript   gene model=Glyma18g49310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTCAAACACTTTTTTCTGGTTCTCACTATAGTTTTCTTCAACCTCTTTTGTTTTGCCACATTGATGTTGTTTTTGAATTGTTTTGTTTGATTTTTTTGTTCTGTCTCTCTCTTGTGGGTCATAACAATTGGTTTTTCTAATGATTTTTATTGATGCTATCAATTTGGCTAAAGGGTGATCCTTCATATCCAAATTCCAAACCCAGTTTGAGATTTTAGAATTTGATTGAGTTGGATTCGTTTTCATTGGTTGTTGGAGTGTGAAGAAATTCTGTCTTCAGTTAATGGACACTCTTCATTCTCAAATGTGATCAATACGATGTTTCCTTGCATGTCAAGAGTTTATAATTGATATGTTTCCTGAAATATTAAATAAAACAATATAAATGATATAGGCATGTGATCTGTGACATAGTTCTGTTTGTTAAAATTGAGGCTGATATCTGTTGGGGACCACTAAATATTTGGAATTTACAATCTCTTGTGGATGAAGTGAATGCAACTAAATGATAGATAATGTTTTCTATAATTTCACTGTTCTGGTTATCTTCTTTGTTTGTTTTTAACAATGCATGGCCTTATTACTGGAGAAATGAAAGGGAAAGGAAAGGCTATTCCCACCATCAGTTTGTGAAGTTGCATGAATGATCCTTATAGGGTCACTCTTTTTCTCTAATAAGTTGTCAAGTTTTTTTCACTTGCTTTGATTTCTGCAGGTTTGCTGACTCTGGTTCTATTTTTTCCAATTTGGGATTGAGTCACTTGACAAGTATGTATAGTGGTGGTTACACTGCTCTAGTTACAAACTTATCCCCAAGAGCAACAGAGGATGATGTGAGAAATTTTTTTACATACTGTGGTTTAATTGAGCATATTGAAATATTAAGATCTGGTGAAAATGCGTCTACTGCATATGTGACTTATCGGGATGCTTATGCCCTGGAAACTGCATTATTGCTAAATTGTGCAGGAGATGTGTCTGACTGACACAATGACAATGTGTTCAATGCAAATCAAGAACACACACATACAAAGTTGTTCATTTCACCCCCCCTATCCTCTCCTCCCTGAAACAGAGTTGGTGGATGTCATCTTGGCCGATGGTGACGACAACAATGGGATCCATGATCTTGGACCAATGTATATTCATTTCACGCTATGAAGCTTATGTAAATGACTATGATAATTGGAGTAGTCATGCATCAAAGCCTGAATACAGTATTACAACCTCACAGGATGTTCACATGGATAAGTTTGTTGGTTCCCCTGGAGAAGCACTAACTATGGCTCAGGTGGTTGTCAAAACAATGGTGGCTAAGGGATATGTGTTGGGCAAAGATGCATTTGTCATGGCAAAAGCTTTTGATGAATCTCACAGTGTATCATCTACAGCAGCATCCAAGGTTGCTGAACTCAGCAATAAAATTGGGTTGACTGATACCATTAATTCAGGCATTGAAACTTTTAAGTCTGTGGATGAGAAGTATCATGTCACAGACTTCACTAAATCAGCTGCAACAGTGACAGGGACAACAGCTATAGTTGTGGCATCAGTTACCGGAAAAGCCGCCGTGGCAGCTGGAACTGCTATAGCCAACAGTAGCTACTTTGCCAAAGGTGCTCTTTGGGTTTCAGATATGCTGACACGTGCAGCGAAAACGGCTGCTGATTTGGGCCAGAATGAAAAGAAATGAAACTCCAAACATGAATTACTGTATAATATGTTAAGTTGTTGAACACAAACAAATAGCAGCATTTGTTTGTTGCTATTGTATTATAAGACGTGAACTTGCTTTACATATGTGGCTACTCATTTGGTGCAAATGTTCATATCAGTAATTTTTGAGAATCCATGGTAAGCAGCCACTTATTTGTGTGTACCCTTTTAGAGAATATAGCATATGGTACAATGTAAGTACCAAGTTTCTTCTTGTCCACTTTCATATTAAATGTGCCTAAAATTATATT

Coding sequences of Glyma18g49310

Limit To All Plant Sequences

>Glyma18g49310.1   sequence type=CDS   gene model=Glyma18g49310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATAGTGGTGGTTACACTGCTCTAGTTACAAACTTATCCCCAAGAGCAACAGAGGATGATGTGAGAAATTTTTTTACATACTGTGGTTTAATTGAGCATATTGAAATATTAAGATCTGGTGAAAATGCGTCTACTGCATATGTGACTTATCGGGATGCTTATGCCCTGGAAACTGCATTATTGCTAAATGGATCCATGATCTTGGACCAATGTATATTCATTTCACGCTATGAAGCTTATGTAAATGACTATGATAATTGGAGTAGTCATGCATCAAAGCCTGAATACAGTATTACAACCTCACAGGATGTTCACATGGATAAGTTTGTTGGTTCCCCTGGAGAAGCACTAACTATGGCTCAGGTGGTTGTCAAAACAATGGTGGCTAAGGGATATGTGTTGGGCAAAGATGCATTTGTCATGGCAAAAGCTTTTGATGAATCTCACAGTGTATCATCTACAGCAGCATCCAAGGTTGCTGAACTCAGCAATAAAATTGGGTTGACTGATACCATTAATTCAGGCATTGAAACTTTTAAGTCTGTGGATGAGAAGTATCATGTCACAGACTTCACTAAATCAGCTGCAACAGTGACAGGGACAACAGCTATAGTTGTGGCATCAGTTACCGGAAAAGCCGCCGTGGCAGCTGGAACTGCTATAGCCAACAGTAGCTACTTTGCCAAAGGTGCTCTTTGGGTTTCAGATATGCTGACACGTGCAGCGAAAACGGCTGCTGATTTGGGCCAGAATGAAAAGAAATGA

>Glyma18g49310.2   sequence type=CDS   gene model=Glyma18g49310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATAGTGGTGGTTACACTGCTCTAGTTACAAACTTATCCCCAAGAGCAACAGAGGATGATGTGAGAAATTTTTTTACATACTGTGGTTTAATTGAGCATATTGAAATATTAAGATCTGGTGAAAATGCGTCTACTGCATATGTGACTTATCGGGATGCTTATGCCCTGGAAACTGCATTATTGCTAAATGGATCCATGATCTTGGACCAATGTATATTCATTTCACGCTATGAAGCTTATGTAAATGACTATGATAATTGGAGTAGTCATGCATCAAAGCCTGAATACAGTATTACAACCTCACAGGATGTTCACATGGATAAGTTTGTTGGTTCCCCTGGAGAAGCACTAACTATGGCTCAGGTGGTTGTCAAAACAATGGTGGCTAAGGGATATGTGTTGGGCAAAGATGCATTTGTCATGGCAAAAGCTTTTGATGAATCTCACAGTGTATCATCTACAGCAGCATCCAAGGTTGCTGAACTCAGCAATAAAATTGGGTTGACTGATACCATTAATTCAGGCATTGAAACTTTTAAGTCTGTGGATGAGAAGTATCATGTCACAGACTTCACTAAATCAGCTGCAACAGTGACAGGGACAACAGCTATAGTTGTGGCATCAGTTACCGGAAAAGCCGCCGTGGCAGCTGGAACTGCTATAGCCAACAGTAGCTACTTTGCCAAAGGTGCTCTTTGGGTTTCAGATATGCTGACACGTGCAGCGAAAACGGCTGCTGATTTGGGCCAGAATGAAAAGAAATGA

>Glyma18g49310.3   sequence type=CDS   gene model=Glyma18g49310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCTTGGCCGATGGTGACGACAACAATGGGATCCATGATCTTGGACCAATGTATATTCATTTCACGCTATGAAGCTTATGTAAATGACTATGATAATTGGAGTAGTCATGCATCAAAGCCTGAATACAGTATTACAACCTCACAGGATGTTCACATGGATAAGTTTGTTGGTTCCCCTGGAGAAGCACTAACTATGGCTCAGGTGGTTGTCAAAACAATGGTGGCTAAGGGATATGTGTTGGGCAAAGATGCATTTGTCATGGCAAAAGCTTTTGATGAATCTCACAGTGTATCATCTACAGCAGCATCCAAGGTTGCTGAACTCAGCAATAAAATTGGGTTGACTGATACCATTAATTCAGGCATTGAAACTTTTAAGTCTGTGGATGAGAAGTATCATGTCACAGACTTCACTAAATCAGCTGCAACAGTGACAGGGACAACAGCTATAGTTGTGGCATCAGTTACCGGAAAAGCCGCCGTGGCAGCTGGAACTGCTATAGCCAACAGTAGCTACTTTGCCAAAGGTGCTCTTTGGGTTTCAGATATGCTGACACGTGCAGCGAAAACGGCTGCTGATTTGGGCCAGAATGAAAAGAAATGA

Predicted protein sequences of Glyma18g49310

Limit To All Plant Sequences

>Glyma18g49310.1   sequence type=predicted peptide   gene model=Glyma18g49310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYSGGYTALVTNLSPRATEDDVRNFFTYCGLIEHIEILRSGENASTAYVTYRDAYALETALLLNGSMILDQCIFISRYEAYVNDYDNWSSHASKPEYSITTSQDVHMDKFVGSPGEALTMAQVVVKTMVAKGYVLGKDAFVMAKAFDESHSVSSTAASKVAELSNKIGLTDTINSGIETFKSVDEKYHVTDFTKSAATVTGTTAIVVASVTGKAAVAAGTAIANSSYFAKGALWVSDMLTRAAKTAADLGQNEKK*

>Glyma18g49310.2   sequence type=predicted peptide   gene model=Glyma18g49310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYSGGYTALVTNLSPRATEDDVRNFFTYCGLIEHIEILRSGENASTAYVTYRDAYALETALLLNGSMILDQCIFISRYEAYVNDYDNWSSHASKPEYSITTSQDVHMDKFVGSPGEALTMAQVVVKTMVAKGYVLGKDAFVMAKAFDESHSVSSTAASKVAELSNKIGLTDTINSGIETFKSVDEKYHVTDFTKSAATVTGTTAIVVASVTGKAAVAAGTAIANSSYFAKGALWVSDMLTRAAKTAADLGQNEKK*

>Glyma18g49310.3   sequence type=predicted peptide   gene model=Glyma18g49310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSWPMVTTTMGSMILDQCIFISRYEAYVNDYDNWSSHASKPEYSITTSQDVHMDKFVGSPGEALTMAQVVVKTMVAKGYVLGKDAFVMAKAFDESHSVSSTAASKVAELSNKIGLTDTINSGIETFKSVDEKYHVTDFTKSAATVTGTTAIVVASVTGKAAVAAGTAIANSSYFAKGALWVSDMLTRAAKTAADLGQNEKK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain