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Report for Sequence Feature Glyma18g49290

Feature Type:gene_model
Chromosome:Gm18
Start:58650196
stop:58652937
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g49290
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01220AT Annotation by Michelle Graham. TAIR10: homeobox protein 20 | chr3:73599-75295 FORWARD LENGTH=286 SoyBaseE_val: 1.00E-80ISS
GO:0000041GO-bp Annotation by Michelle Graham. GO Biological Process: transition metal ion transport SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000976GO-mf Annotation by Michelle Graham. GO Molecular Function: transcription regulatory region sequence-specific DNA binding SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
KOG0483 KOG Transcription factor HEX, contains HOX and HALZ domains JGI ISS
PTHR24326Panther FAMILY NOT NAMED JGI ISS
PTHR24326:SF224Panther JGI ISS
PF00046PFAM Homeobox domain JGI ISS
PF02183PFAM Homeobox associated leucine zipper JGI ISS
UniRef100_G7KZX6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Homeobox-leucine zipper-like protein n=1 Tax=Medicago truncatula RepID=G7KZX6_MEDTR SoyBaseE_val: 6.00E-117ISS
UniRef100_UPI000233F0F0UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F0F0 related cluster n=1 Tax=unknown RepID=UPI000233F0F0 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g49290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49290
ParalogEvidenceComments
Glyma09g37410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49290 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g258400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g49290
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g49290
>Glyma18g49290.1   sequence type=CDS   gene model=Glyma18g49290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTCCTACCTTCTCACGGTTTCACGTTTAACACTACTCATGAAGAAGATCACTGCCACTTCCCTCCAACCTCTCTCGACCCCTTCCCCTCTTTGCCACCCCAGCACTTTCAAGGGGGTGCACCTTTCATGTTGAAGCGGTCCATGTCGTTATCAGGCATAGAGAACAAGTGCAATGAAGTACATGGAGATGATGAGTTATCCGATGATGGGGTCTTCCAGAGTGGGGAGAAGAAGAAGAGGTTGAATTTGGAACAGGTGAAGGCCCTTGAGAAGAGTTTTGATCAGGGGAACAAACTTGAGCCAGAAAGGAAAGTGCAGTTAGCTAAGGCTTTGGGGTTGCAGCCAAGACAAGTTGCCATATGGTTTCAGAATAGAAGGGCTAGATGGAAAACCAAGCAATTGGAGAAAGAATATGAAGTCCTCAAGAAGCAGTTTGAAGCAGTCAAGGCTGATAATGATGTTCTTAAGGTTCGGAACCAGAAACTACAGGCAGAGTTACAAGCTGTAAAAAGTAGGGATTGTTGTGAAGCTGGAATAATCAGCCTTAAGAAAGAAACTGAGGGTTCATGGAGCAATGGAAATGATAACAACTCAGATCTAAATTTAGATCCCTCAAGAGCACTAGGTTTGAACAGTCCTATATCTTCTCATAACATTAAAAACCTACTACCAAATTCGTTAAAGCCAAACAGCATAACCCAACTCCTTCAAGATGATGGCTTGTGCAACATGTTTCACAACATTGATGCACCACAGAACTTTTGGCCCAGGCCTGATCAGCACCACCAGCGTTTCCATTGA
Predicted protein sequences of Glyma18g49290
>Glyma18g49290.1   sequence type=predicted peptide   gene model=Glyma18g49290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFLPSHGFTFNTTHEEDHCHFPPTSLDPFPSLPPQHFQGGAPFMLKRSMSLSGIENKCNEVHGDDELSDDGVFQSGEKKKRLNLEQVKALEKSFDQGNKLEPERKVQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDVLKVRNQKLQAELQAVKSRDCCEAGIISLKKETEGSWSNGNDNNSDLNLDPSRALGLNSPISSHNIKNLLPNSLKPNSITQLLQDDGLCNMFHNIDAPQNFWPRPDQHHQRFH*






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