SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G29590 | AT | Annotation by Michelle Graham. TAIR10: HXXXD-type acyl-transferase family protein | chr3:11398917-11400266 REVERSE LENGTH=449 | SoyBase | E_val: 2.00E-79 | ISS |
| GO:0009718 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0010224 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV-B | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| GO:0016747 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups | SoyBase | N/A | ISS |
| GO:0050736 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: O-malonyltransferase activity | SoyBase | N/A | ISS |
| PF02458 | PFAM | Transferase family | JGI | ISS | |
| UniRef100_G7JQT5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Isoflavonoid malonyl transferase n=2 Tax=Medicago truncatula RepID=G7JQT5_MEDTR | SoyBase | E_val: 1.00E-170 | ISS |
| UniRef100_I1N4C1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4C1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g49240 not represented in the dataset |
Glyma18g49240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g258000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g49240.1 sequence type=CDS gene model=Glyma18g49240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGTGGAAAATATCAAAGTCCACGAAGAGTCCAACGTTGCCCCTCCACCATCATCAACACAATCACTATCCCTCCCTTTCACTTTGTATGACACTTTGTTCCTCAGGTTCCCTTCCATTGACTGGATCTTCTTCTATTCCCTCAATGCTCAACAATCAGAACCTTCTTTCTTCTATGCCAATGTGATTCCAAAGCTCAAAGCCTCTCTCTCTCACACCCTCCTACACTACCCTCCTCTCGCTGGCAACATTCTTTGGCCTTCTGATTCCACAATTCCAATCATCAGTTACACCCCTGGTGATGCCGTTTCCGTCGTTGTTGCTGAGTCCAATGCTGAATTCAACCACTTCATAGATTACTCAGTGCCCCATGAAGCAACAGAGTCTCGTTTTTTAGTACCCCACTTGGAATCCTCGGATTCTCGTGCTTCTGCCCTAGCTCTTCAGATCACTCTTTTCCCCAACAAAGGCTTCAGCATTGGCATCAGCATCCACCATGCTGCTGTTGATGGAAGATCTTCCACCATGTTCATCAAGGCTTGGGCTTCTCTGTGCCAACAAATTATTATGAACTATGAAACAACATCACAAAGTGTGGTGGTGCCATCTTTGGTGCCGGAGTTGGAGCCTTCCTTTGACAGAACACTCATCAAAGACCCGGGAAATTGGAACCGCTTCTTGTTAGCAAAATGGTGCCCTAATATTGCTAATGGAAACAGTGATGGTGATGATAATGGGAAGCGAACCGTGAAGATTCTACCTTCCCCACCAAGACTCAAGGAAGCGTTTTCAGCCACGTCAGTGATTAAACCAACAATTGAGGAAGCAGTTAGAGCCACGTTTGTTCTCACACGAGAGGATTTGGAGAAGATAAAGAAAAGGGTCTTCTCCAAGTGGGACCAAGTGAAAGACCCAGAACCAGAACCAGAATCAGAATCAGAATCAAAATCAACGGTTAATTCTTCTTCAAAGCCACCAACTTTATCATCCTTTGTTCTTGCATGTGCATATTCTGTTGTGTGTATTGCAAAAGCGGTTCACGGGGTTGAAAAGGAGAAGCAAAAGTTTGGTTTCTGGTTCCCGGTGGATTATAGGGCTAGGTTAGAGCCTCCAATCCCTGATACCTATTTTGGAAACTGTGTGTGGAGCCACTTGGTGGATGCAGAACCCTTGGACTTCATAAAGGAAGAAGGGCTCGTCCTTGTTGCAAAAAGCATTAACAGAAAAGTGAAGACCTTACACAAGGAAGAAGTTTTCGGTAAATCGTCTTCTCGGTTCATGGCTTTGGCTAAAGAAGGAGCTGAAATGTTGGGAGTGTCGATGTCTAACAAATTTATGGTTTATGAGACTGATTTTGGTTGGGGGAAGCCTGCTAAGGTGGACATTATAAATTTGGATAGGGCTTCGAATTTGACCATGGGGTTGTTGGACAGCAAGGATGGGGATGGAGGTGTTGAAGTGGGGCTCGTTATGCATCAGAAGGTGATGGATCTCTTTGGTACTATTTTTCATGGAGGACTGAAAGATGAGTGA
>Glyma18g49240.1 sequence type=predicted peptide gene model=Glyma18g49240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVENIKVHEESNVAPPPSSTQSLSLPFTLYDTLFLRFPSIDWIFFYSLNAQQSEPSFFYANVIPKLKASLSHTLLHYPPLAGNILWPSDSTIPIISYTPGDAVSVVVAESNAEFNHFIDYSVPHEATESRFLVPHLESSDSRASALALQITLFPNKGFSIGISIHHAAVDGRSSTMFIKAWASLCQQIIMNYETTSQSVVVPSLVPELEPSFDRTLIKDPGNWNRFLLAKWCPNIANGNSDGDDNGKRTVKILPSPPRLKEAFSATSVIKPTIEEAVRATFVLTREDLEKIKKRVFSKWDQVKDPEPEPESESESKSTVNSSSKPPTLSSFVLACAYSVVCIAKAVHGVEKEKQKFGFWFPVDYRARLEPPIPDTYFGNCVWSHLVDAEPLDFIKEEGLVLVAKSINRKVKTLHKEEVFGKSSSRFMALAKEGAEMLGVSMSNKFMVYETDFGWGKPAKVDIINLDRASNLTMGLLDSKDGDGGVEVGLVMHQKVMDLFGTIFHGGLKDE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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