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Report for Sequence Feature Glyma18g49196

Feature Type:gene_model
Chromosome:Gm18
Start:58599604
stop:58601143
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g49196
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G41370AT Annotation by Michelle Graham. TAIR10: homolog of xeroderma pigmentosum complementation group B 1 | chr5:16551337-16555792 FORWARD LENGTH=767 SoyBaseE_val: 4.00E-45ISS
GO:0006289GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide-excision repair SoyBaseN/AISS
GO:0009411GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV SoyBaseN/AISS
GO:0009636GO-bp Annotation by Michelle Graham. GO Biological Process: response to toxin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0004003GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP-dependent DNA helicase activity SoyBaseN/AISS
GO:0004386GO-mf Annotation by Michelle Graham. GO Molecular Function: helicase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008026GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
PTHR11274Panther RAD25/XP-B DNA REPAIR HELICASE JGI ISS
UniRef100_D7MIW4UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA repair and transcription factor XPB1 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MIW4_ARALL SoyBaseE_val: 1.00E-42ISS
UniRef100_I1K6G2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K6G2_SOYBN SoyBaseE_val: 6.00E-46ISS

Expression Patterns of Glyma18g49196
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g49196 not represented in the dataset
Glyma18g49196 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g49196 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g257500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g49196
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g49196
>Glyma18g49196.1   sequence type=CDS   gene model=Glyma18g49196   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGCACTTTACGTGATGAATCCTAATAAGTTCAGAGCATGTGAGTTTCTCATAAATTTCCATGAAAGGACATGTGGTGATAAAATTATAGTCTTTGCTGATAATCTGTTTGCTCTCACTGAGTATGCTATGAAACTCCGTAAACCAATGATATATGGTGTTACAAGTCATGTTGAGAGGACAAAAATTTTGCAAGCATTCAAAACTAGCAAAGATATAAATACTATTTTTCTTTCCAAGGGAAAGCTTGAGGATAGGATGGTAGGGGCAAGGAGGAGTATAATGCATTTTTTCATTCCCTTGTTTCAATTGATACCCAGAGATGTATTACTCAACTAA
Predicted protein sequences of Glyma18g49196
>Glyma18g49196.1   sequence type=predicted peptide   gene model=Glyma18g49196   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQALYVMNPNKFRACEFLINFHERTCGDKIIVFADNLFALTEYAMKLRKPMIYGVTSHVERTKILQAFKTSKDINTIFLSKGKLEDRMVGARRSIMHFFIPLFQLIPRDVLLN*






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