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Report for Sequence Feature Glyma18g49189

Feature Type:gene_model
Chromosome:Gm18
Start:58594001
stop:58595120
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g49189
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16830AT Annotation by Michelle Graham. TAIR10: Hyaluronan / mRNA binding family | chr4:9470621-9472308 FORWARD LENGTH=355 SoyBaseE_val: 7.00E-46ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
PTHR12299Panther HYALURONIC ACID-BINDING PROTEIN 4 JGI ISS
PTHR12299:SF4Panther NUCLEAR RNA BINDING PROTEIN A-LIKE PROTEIN JGI ISS
PF04774PFAM Hyaluronan / mRNA binding family JGI ISS
UniRef100_B9RCY9UniRef Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RCY9_RICCO SoyBaseE_val: 6.00E-63ISS
UniRef100_I1JMQ3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JMQ3_SOYBN SoyBaseE_val: 7.00E-88ISS

Expression Patterns of Glyma18g49189
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g49189 not represented in the dataset
Glyma18g49189 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g49189 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g257400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g49189
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g49189
>Glyma18g49189.1   sequence type=CDS   gene model=Glyma18g49189   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGACATGGTCGTCGTGGAGGTTTTAGCAATGGTGAAGCTGGTGATGAAGGATGTCCAAGAAGAGCATTTAAACGCCACAGTGGGACTGGACGAGGAAATGAATTCAAACGGGAAGGGTTTGGACGAGGGAACTGGGGTACACAGAATGAGGACATTGCTGAGGTGATTGAGGAAGTGGTAAATGAAACTGAAAAGATTCTTGCTGATGAGAAGCCTGTAGGAGAGGAAGATGCAGCAGAAGGAAACAAGGACAGTCCTGCTAATGAAAATGAAGAAAAGGAGCCTGAGGACAAGGAGATGACACTGGAAGAGTATGAGAAGGTGCTGGAAGAGAAAAGGAAGGCCCTGCAGGCTCAAAAGACTGAAGCAAGAAAGGTGGACATCAAGGAATTTGCATCCATGCAGCCACTGTCAAACAAGAAAGAAAATGATGAGATCTTTATTAAATTGGTGAGAATTTCTGGCCCCACTTTTGCCCTTAATTTGTAA
Predicted protein sequences of Glyma18g49189
>Glyma18g49189.1   sequence type=predicted peptide   gene model=Glyma18g49189   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
RHGRRGGFSNGEAGDEGCPRRAFKRHSGTGRGNEFKREGFGRGNWGTQNEDIAEVIEEVVNETEKILADEKPVGEEDAAEGNKDSPANENEEKEPEDKEMTLEEYEKVLEEKRKALQAQKTEARKVDIKEFASMQPLSNKKENDEIFIKLVRISGPTFALNL*






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