Glyma18g49140 - SoyBase

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Report for Sequence Feature Glyma18g49140

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58523162
stop:	58526842
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15130	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 72 \| chr5:4904426-4906879 FORWARD LENGTH=548	SoyBase	E_val: 9.00E-82	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G7KZU9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=1 Tax=Medicago truncatula RepID=G7KZU9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EF90	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EF90 related cluster n=1 Tax=unknown RepID=UPI000233EF90	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma18g49140

Locus	Gene Symbol	Protein Name
	WRKY173	WRKY Transcription Factor

Expression Patterns of Glyma18g49140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49140

Paralog	Evidence	Comments
Glyma09g37470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g256500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g49140

Limit To All Plant Sequences

>Glyma18g49140.2   sequence type=CDS   gene model=Glyma18g49140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAAAATGTCTAGCCCCAATGGTCCAGAGATAGAAGAGAAGAGAGTTACAAAGGAAGATAAATTCAAATCTGCTAAAACTGAAATGGGTGAGGTGAAGGAAGAAAATGAGAGATTGAAGATGATGCTGGAAAGAGTAGAAAAGGACTATCACTCCCTTCAACTCCGTTTCTTTGACATCCTTCACAAAGATGTTTCAAAGAAGGGTTTAGCTGTTTCATCTACTTCCCTTGATCATGAAACTGCAGAGCCTGAGCTTGTGTCACTTTGCCTTGGAAGGAGTCCAATGGAGCCTAAGAAAGAATTAGCAAGAATTGGATACTCCAACAAACCAAAAGAAGAAGACGTTGGACCCAACCTTACTCTTGGATTAGACTCCAAACACCTTTTGTCAATGGAGGTTGTGTCTGATTTGAGTCCCACGAATAGCTCAGAAGAACCAAAGGAAGTAGAAGCTGAGGGAACAAATCAATCAGCAAAAGTGATAAATGTAAATGATGACGTTTCAGATCAAATGCCAGCCAAGAGAGCCAGGGTATCTGTGAGAGCAAGATGTGATACTCCCACGATGAATGATGGATGCCAGTGGAGGAAATATGGACAGAAGATAGCAAAGGGAAATCCATGTCCAAGGGCATACTATCGTTGCACAGTTGCACCAACATGTCCAGTCAGGAAGCAGGTGCAAAGGTGTGCTGAGGACTTGTCCATCTTAATCACCACATATGAAGGAACACACAACCACCCTCTTGCAGTTTCAGCCACAGCCATGGCTTCAACCACTTCAGCTGCTGCTTCCATGCTGTTGTCAGGTTCTTCAACATCTCACCTTACAAGCCACAATTCTGCATCTTTTGGAAATGCTCCTACCACACTACTCAATGGTGTGAGTTTCAGTCATCAGTTTGATGAACTAAGAGCCAAACAAATGTTGTCACCACCAAACCATGTCTCACCAAATCTGTTTTCAACAATCACTTTAGACATGACTTCTTCAGCTTCTAATTCCTCCTCATCAACTCAATTCCATCATCGCTTACCTTCGACGATAGCTTCAATTTCAAACCCAAAATTTTCTCCAGCTAGTCTCAGCTTTTGTTCCCAAGATAATAACTTCATACCATCCATTTGGGGTAAGGGGGGTGACACTTCCACAACACCAATTGACAAAATCCCCATGACTAGGCCAGTTATCAAGGGAAATCAATATTTCCAAGAAAATTTCTATCAACAAAGCATAACAAAGCAAACTCCTTCCAAAGAAGCTTTGGCAGAAACAATAACAAAGGCAATCAGCACAGACCCGAGTCTTCGTTCAGTAATAGCTGCTGCAGTTTCATCAATAGTGGGGAATGGATCAAGCAGTGGGAACCAAGAGGAATCAGACAATGTTCTTGGTTCAGGGTTGAACTTAAAACTTGGGGAGCATTTTCAATTGGCTTCACCCAATCCCTTGAACCAGAATAGGAAAGAATGCTTAACAAGCTACTTCAAAAGTTTGTCCTCAAAGAATTCTGAGGCAGGAAGCTTCATTTTTCTCCAACCACCATTGCCATTTTCTTTCTCCAAGAGTAGCACAAATCAGGTCAACCATTATGTTCAAGAAATGAACTCACATCATTAG

Predicted protein sequences of Glyma18g49140

Limit To All Plant Sequences

>Glyma18g49140.2   sequence type=predicted peptide   gene model=Glyma18g49140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKMSSPNGPEIEEKRVTKEDKFKSAKTEMGEVKEENERLKMMLERVEKDYHSLQLRFFDILHKDVSKKGLAVSSTSLDHETAEPELVSLCLGRSPMEPKKELARIGYSNKPKEEDVGPNLTLGLDSKHLLSMEVVSDLSPTNSSEEPKEVEAEGTNQSAKVINVNDDVSDQMPAKRARVSVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPTCPVRKQVQRCAEDLSILITTYEGTHNHPLAVSATAMASTTSAAASMLLSGSSTSHLTSHNSASFGNAPTTLLNGVSFSHQFDELRAKQMLSPPNHVSPNLFSTITLDMTSSASNSSSSTQFHHRLPSTIASISNPKFSPASLSFCSQDNNFIPSIWGKGGDTSTTPIDKIPMTRPVIKGNQYFQENFYQQSITKQTPSKEALAETITKAISTDPSLRSVIAAAVSSIVGNGSSSGNQEESDNVLGSGLNLKLGEHFQLASPNPLNQNRKECLTSYFKSLSSKNSEAGSFIFLQPPLPFSFSKSSTNQVNHYVQEMNSHH*

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