Glyma18g49130 - SoyBase

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Report for Sequence Feature Glyma18g49130

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58507923
stop:	58515435
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39890	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1637) \| chr5:15974543-15976013 FORWARD LENGTH=276	SoyBase	E_val: 1.00E-114	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0010310	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0047800	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteamine dioxygenase activity	SoyBase	N/A	ISS
KOG4281	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR22966	Panther	UNCHARACTERIZED	JGI		ISS
PF07847	PFAM	Protein of unknown function (DUF1637)	JGI		ISS
UniRef100_G7KZU7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 2-aminoethanethiol dioxygenase n=1 Tax=Medicago truncatula RepID=G7KZU7_MEDTR	SoyBase	E_val: 3.00E-128	ISS
UniRef100_I1N4B2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N4B2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g49130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49130

Paralog	Evidence	Comments
Glyma09g37490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g256400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g49130

Limit To All Plant Sequences

>Glyma18g49130.2   sequence type=transcript   gene model=Glyma18g49130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTATATCAAACATGCAATATCAAATTCTGCTTCATTCCAATGTTTGTTTCTCCCCTCTCTCTTCCCCTTCACTTCACACCAATGTTCCTTTTCACTTCCCCACACTCCCCCTTTTACCGTTTTACCTGCGTTAAACCCTCTTAGAATCTCACCCCACTTTTCACTACATCTTATAACACACCTTCCCCTGTTTTCCTCTGTTTTGCTTCTTCTAGAGTACCCTCTTCCTACATGTTTTTTCCCTGACTTTTCTTCCTTACCCATTTCCCATAATTGTATTTTATCCTCGAACATATCAATAGTTCCTCGATCAGACTCATTTGTACACGAAAGTTCTCTTTTTTGGGGTGTGTGTGATCTGCATTATAGCAGGGTTAATATAAATGGGGATTGGGAAGAACCTGTCTGAGACAAAAGGGAGGGAGTTGTGTGAATTGCGTGAAGAGACCAATACCAACACCACCAACAGCAATAACAACAAATCGAGGAGGAACCGGAGACATCGTCAGAGGAAGATGTCGCCTGGTCAGAAATTGTTTCAAACGTGTAATGAAGTGTTTGCTTCTACTGGCCCTGGGATTGTTCCTTCCCCTCAAAACATTGAAATGCTTCTCTCTGTTTTAGGTGAAATAAAACAAGAAGACGTTGGCTTAAAGCCTGAAATGGCATTTTTCAGTTCAAATAATCCTCGAAGAACTCCAAAAATTACATACCTGCACATTTATGAGTGTCAACAATTTTCGATGGGAATATTTTGCTTGCCACCTTCTGGAGTTATTCCTCTTCACAATCACCCTGGAATGACGGTTTTTAGTAAGCTTCTTTTTGGAACCATGCACATCAAATCTTATGATTGGGTCGTTGACTTGCCTCCTCACATGCCTACCATAGTCAAACCATCATCAGAAACCGAGGCTTCGGATATGCGATTGGCTAAAGTCAAGGTTGATGCTGATTTCAATGCTCCTTGTGACCCCTCCATCCTTTATCCTGCTGAGGGCAACATGCATTGGTTCACGGCAGTGACAGCTTGCGCAGTTTTAGATGTTCTTGGTCCTCCATACTCTGATCCTGATGGAAGGCACTGCACATACTACCAGAATTTCCCTTTCTCCAGCTATTCAGATGGACTATCCATACCAGAGGAGGAAAGAACAGCATATGAATGGCTTCAAGAGAAGGAGAAACCTGAGAATTTAAAAGTAGTTGTAAAGATGTACAGCGGCCCAAAAATTGTGGAGAACTAATGTTGTCATGTCACCCAACATCTACTTGTTCCTATGATCTGTTGCTGCAGTCAAATGATATTCCTGTTGATCATTTGTCTTATTCTATCCCATTTGATGCCACCCTTTTGTCCTCTTGTGAACCTTGGTCTATCTTTATACCCTTTTTAATTAGTATTTTTATTTTCTTCTTCATGGAACATGAGGCTCTTAATTGGTGCTGTTTTGTGCCTACAGTTAGTTATTATGTACATACAGAAAACAACAAAAGACAAACATGATACTTACACTGGAAAATAGTATCAAAATGAAGGTGCATATTGCATAGTAATGAACTGGTTTTCTTTTTCTTCTTCTTTTTTTTTTAAAAAAAGATGTGCTTGCTTTTTAGCTGGATTTATTTAATTCAATTAGTCTGATGCCAAAAA

Coding sequences of Glyma18g49130

Limit To All Plant Sequences

>Glyma18g49130.1   sequence type=CDS   gene model=Glyma18g49130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATTGGGAAGAACCTGTCTGAGACAAAAGGGAGGGAGTTGTGTGAATTGCGTGAAGAGACCAATACCAACACCACCAACAGCAATAACAACAAATCGAGGAGGAACCGGAGACATCGTCAGAGGAAGATGTCGCCTGGTCAGAAATTGTTTCAAACGTGTAATGAAGTGTTTGCTTCTACTGGCCCTGGGATTGTTCCTTCCCCTCAAAACATTGAAATGCTTCTCTCTGTTTTAGGTGAAATAAAACAAGAAGACGTTGGCTTAAAGCCTGAAATGGCATTTTTCAGTTCAAATAATCCTCGAAGAACTCCAAAAATTACATACCTGCACATTTATGAGTGTCAACAATTTTCGATGGGAATATTTTGCTTGCCACCTTCTGGAGTTATTCCTCTTCACAATCACCCTGGAATGACGGTTTTTAGTAAGCTTCTTTTTGGAACCATGCACATCAAATCTTATGATTGGGTCGTTGACTTGCCTCCTCACATGCCTACCATAGTCAAACCATCATCAGAAACCGAGGCTTCGGATATGCGATTGGCTAAAGTCAAGGTTGATGCTGATTTCAATGCTCCTTGTGACCCCTCCATCCTTTATCCTGCTGAGGGCAACATGCATTGGTTCACGGCAGTGACAGCTTGCGCAGTTTTAGATGTTCTTGGTCCTCCATACTCTGATCCTGATGGAAGGCACTGCACATACTACCAGAATTTCCCTTTCTCCAGCTATTCAGTAGATGGACTATCCATACCAGAGGAGGAAAGAACAGCATATGAATGGCTTCAAGAGAAGGAGAAACCTGAGAATTTAAAAGTAGTTGTAAAGATGTACAGCGGCCCAAAAATTGTGGAGAACTAA

>Glyma18g49130.2   sequence type=CDS   gene model=Glyma18g49130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATTGGGAAGAACCTGTCTGAGACAAAAGGGAGGGAGTTGTGTGAATTGCGTGAAGAGACCAATACCAACACCACCAACAGCAATAACAACAAATCGAGGAGGAACCGGAGACATCGTCAGAGGAAGATGTCGCCTGGTCAGAAATTGTTTCAAACGTGTAATGAAGTGTTTGCTTCTACTGGCCCTGGGATTGTTCCTTCCCCTCAAAACATTGAAATGCTTCTCTCTGTTTTAGGTGAAATAAAACAAGAAGACGTTGGCTTAAAGCCTGAAATGGCATTTTTCAGTTCAAATAATCCTCGAAGAACTCCAAAAATTACATACCTGCACATTTATGAGTGTCAACAATTTTCGATGGGAATATTTTGCTTGCCACCTTCTGGAGTTATTCCTCTTCACAATCACCCTGGAATGACGGTTTTTAGTAAGCTTCTTTTTGGAACCATGCACATCAAATCTTATGATTGGGTCGTTGACTTGCCTCCTCACATGCCTACCATAGTCAAACCATCATCAGAAACCGAGGCTTCGGATATGCGATTGGCTAAAGTCAAGGTTGATGCTGATTTCAATGCTCCTTGTGACCCCTCCATCCTTTATCCTGCTGAGGGCAACATGCATTGGTTCACGGCAGTGACAGCTTGCGCAGTTTTAGATGTTCTTGGTCCTCCATACTCTGATCCTGATGGAAGGCACTGCACATACTACCAGAATTTCCCTTTCTCCAGCTATTCAGATGGACTATCCATACCAGAGGAGGAAAGAACAGCATATGAATGGCTTCAAGAGAAGGAGAAACCTGAGAATTTAAAAGTAGTTGTAAAGATGTACAGCGGCCCAAAAATTGTGGAGAACTAA

Predicted protein sequences of Glyma18g49130

Limit To All Plant Sequences

>Glyma18g49130.1   sequence type=predicted peptide   gene model=Glyma18g49130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIGKNLSETKGRELCELREETNTNTTNSNNNKSRRNRRHRQRKMSPGQKLFQTCNEVFASTGPGIVPSPQNIEMLLSVLGEIKQEDVGLKPEMAFFSSNNPRRTPKITYLHIYECQQFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDLPPHMPTIVKPSSETEASDMRLAKVKVDADFNAPCDPSILYPAEGNMHWFTAVTACAVLDVLGPPYSDPDGRHCTYYQNFPFSSYSVDGLSIPEEERTAYEWLQEKEKPENLKVVVKMYSGPKIVEN*

>Glyma18g49130.2   sequence type=predicted peptide   gene model=Glyma18g49130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIGKNLSETKGRELCELREETNTNTTNSNNNKSRRNRRHRQRKMSPGQKLFQTCNEVFASTGPGIVPSPQNIEMLLSVLGEIKQEDVGLKPEMAFFSSNNPRRTPKITYLHIYECQQFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDLPPHMPTIVKPSSETEASDMRLAKVKVDADFNAPCDPSILYPAEGNMHWFTAVTACAVLDVLGPPYSDPDGRHCTYYQNFPFSSYSDGLSIPEEERTAYEWLQEKEKPENLKVVVKMYSGPKIVEN*

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