Glyma18g49121 - SoyBase

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Report for Sequence Feature Glyma18g49121

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58498587
stop:	58502955
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49121

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF01081	PFAM	KDPG and KHG aldolase	JGI		ISS
UniRef100_A2Q5T0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: KDPG and KHG aldolase n=1 Tax=Medicago truncatula RepID=A2Q5T0_MEDTR	SoyBase	E_val: 1.00E-89	ISS
UniRef100_UPI000233860E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233860E related cluster n=1 Tax=unknown RepID=UPI000233860E	SoyBase	E_val: 5.00E-119	ISS

Expression Patterns of Glyma18g49121

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g49121 not represented in the dataset	Glyma18g49121 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49121

Paralog	Evidence	Comments
Glyma09g37515	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49121 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g256300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49121

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g49121

Limit To All Plant Sequences

>Glyma18g49121.1   sequence type=CDS   gene model=Glyma18g49121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACTGCAACTGCAACCTTATCCCTGTGCCAATGGCTTTCTTCTTCTTCTTCTATGCGCATGCATGTGAGGTTTTCATGCAGAACCCCTCACCTTACAGCATCTGCAGTGCCAAATCAACAATTCTGTGCAGAAGTGGCCATGGAAGCTGCAAAAGCTGCAATAGCAGGTGGCATTTCAGTTTTGGAGATTGTGGTGTTGACCCCAGGTGTGTTTGAGCAGCTGGTGAAGGAGCATCCTACAATGGCCCTAGGGATATGCTTTCATCTTTTAAGTTTCTATCTAGTTTCTCACATGGTTGGAACTGTTCTAAGGATTGAGGATGCAAAAAGTGCAATTAATGCTGGAGCCAAATTTCTAATGAGTCCTGCAACAGTTAAGGACATAATGGTAATGGATTATGTTCAGAGTGGTGAAATTTTATATATTCCTGGCACAATGACTCCAACTGAAATATTGTCAACATGGGATGAAGGTGCTAAAATTGTCAAGGTGGGGCTTTGCATTTTCTTTAATGTTTACTATGTTGAAGAACTTGGAGGATTTCAGTACATATCATCACTGAAGAAGGCCTTTCCTCATGTTTCTATGGTTGCTTCTCAAGGAATAAAAATAGATTCAATTGGGGAATACATTTTGCGAGGAGCATCGGCAGTTGTTTTGTCAGATGCGATATTTGATAAAGATGCAATTGCACAACATGATTTCGATAAGATACAAAATCTTGCACATTCTGCTGCCTTGCTGGGTAACAAATCTGTGAATAGGTAA

Predicted protein sequences of Glyma18g49121

Limit To All Plant Sequences

>Glyma18g49121.1   sequence type=predicted peptide   gene model=Glyma18g49121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTATATLSLCQWLSSSSSMRMHVRFSCRTPHLTASAVPNQQFCAEVAMEAAKAAIAGGISVLEIVVLTPGVFEQLVKEHPTMALGICFHLLSFYLVSHMVGTVLRIEDAKSAINAGAKFLMSPATVKDIMVMDYVQSGEILYIPGTMTPTEILSTWDEGAKIVKVGLCIFFNVYYVEELGGFQYISSLKKAFPHVSMVASQGIKIDSIGEYILRGASAVVLSDAIFDKDAIAQHDFDKIQNLAHSAALLGNKSVNR*

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