Glyma18g49090 - SoyBase

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Report for Sequence Feature Glyma18g49090

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58477403
stop:	58480577
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g49090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15110	AT	Annotation by Michelle Graham. TAIR10: Pectate lyase family protein \| chr5:4895966-4897682 FORWARD LENGTH=472	SoyBase	E_val: 8.00E-179	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016829	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lyase activity	SoyBase	N/A	ISS
GO:0030570	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectate lyase activity	SoyBase	N/A	ISS
PF00544	PFAM	Pectate lyase	JGI		ISS
PF04431	PFAM	Pectate lyase, N terminus	JGI		ISS
UniRef100_Q40319	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pectate lyase homolog n=1 Tax=Medicago sativa RepID=Q40319_MEDSA	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E9CB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E9CB related cluster n=1 Tax=unknown RepID=UPI000233E9CB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g49090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g49090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g255900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g49090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g49090

Limit To All Plant Sequences

>Glyma18g49090.1   sequence type=CDS   gene model=Glyma18g49090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGAAGTGCAAGTAAGGTTACCTTTATCTTCTTGGTTGCTTTTGCCATTTCTATTCCATGCCTTGAGGCGGGCATTGCTGAGTTTGACGATTTTCTGAAAGCACAAGCTGATGAGGCCCATGAGATCGCTCTTCGCTCCTACGAACCTGACCCTATAAACGTTACAGCCGAGTTCAATATCCATGTTCATAGGGCATTAATGGAGGAATCAAACGACACAAGGAGGGAACTAAAGCAGAAATACCGTGGACCATGCTTGGCCACGAACCCAATCGATCGTTGTTGGAGGTGTAGGAAAGATTGGGCACAAGACCGTTATAGGTTAGCCAGTTGTGGCAAGGGTTTCGGAAGAAGGGCCGTGGGAGGACTCCACGGCAAAATCTACGTCGTCACCGATTCCTCCGATGACGAACCCATTAACCCTAGACCCGGGACTCTCAGGTACGGTGTTCTCCAAAGGGAACCACTGTGGATCATATTTGCACAGAGCATGGTGATCACATTGAAGTTCGAGCTGTTGATTTCTTCGGACAAGACCATCGACGGCCGCGGCGCCAACGTGGTGATCAAGGGTGGTGCTGGCCTTGCCATGCAGTTTGTGAACAACATTATTATTCACGGGATTCGCATCAACAAGATCAAGTCCATGGAAGGTACCATGCTTAGGGACCTGTGGAACCACGTTGGAATAAGAACAAGGTGTGATGGGGATGCTGTGTCCATTTTTGGTTCTTCCAACATTTGGCTCGATCATCTTTCGCTGTCTGAATGCGAGGATGGTCTCATTGATATTGTCCAGGGCTCCACTGGAATCACCATCTCAAATTGTCACATGACCAAACATAACGATGTAATGCTGTTTGGAGCTAGCGACACCTACGCCGGTGACAAGATAATGCAGGTTACAGTGGCATTCAACCACTTTGGTCAGGGGCTGATCCAGAGAATGCCAAGGTGCAGATGGGGTTTCGTCCATGTGATAAACAATGACTACACTCACTGGCTGATGTACGCAATCGGTGGCAGCTCAGAGCCAACGATTCTGAGCCAGGGAAACCGGTTCATTGCGCCCAACAACAACGCTGCCAAGGAAATCACACACAGGGACTATGCTCCACCTGAAGAATGGAGCAAATGGCAGTGGAAATCAGAGAACGACCTCTTCATGAATGGGGCTACTTTTCTTCAGTCAGGATCACCTCTTGGGAAGCTTCCATTCAACAAAGGGCTCATGATGAAACCTAGACCTGGGGCCGAAGCCAACAGGCTCACACGCTTTGCTGGTGCCCTAAATTGCAAGGTGGGTAAGCCTTGCTAG

Predicted protein sequences of Glyma18g49090

Limit To All Plant Sequences

>Glyma18g49090.1   sequence type=predicted peptide   gene model=Glyma18g49090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGSASKVTFIFLVAFAISIPCLEAGIAEFDDFLKAQADEAHEIALRSYEPDPINVTAEFNIHVHRALMEESNDTRRELKQKYRGPCLATNPIDRCWRCRKDWAQDRYRLASCGKGFGRRAVGGLHGKIYVVTDSSDDEPINPRPGTLRYGVLQREPLWIIFAQSMVITLKFELLISSDKTIDGRGANVVIKGGAGLAMQFVNNIIIHGIRINKIKSMEGTMLRDLWNHVGIRTRCDGDAVSIFGSSNIWLDHLSLSECEDGLIDIVQGSTGITISNCHMTKHNDVMLFGASDTYAGDKIMQVTVAFNHFGQGLIQRMPRCRWGFVHVINNDYTHWLMYAIGGSSEPTILSQGNRFIAPNNNAAKEITHRDYAPPEEWSKWQWKSENDLFMNGATFLQSGSPLGKLPFNKGLMMKPRPGAEANRLTRFAGALNCKVGKPC*

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