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Report for Sequence Feature Glyma18g49070

Feature Type:gene_model
Chromosome:Gm18
Start:58458466
stop:58463205
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g49070
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01280AT Annotation by Michelle Graham. TAIR10: voltage dependent anion channel 1 | chr3:85754-87612 FORWARD LENGTH=276 SoyBaseE_val: 5.00E-150ISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0006820GO-bp Annotation by Michelle Graham. GO Biological Process: anion transport SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0044070GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of anion transport SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005741GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial outer membrane SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008308GO-mf Annotation by Michelle Graham. GO Molecular Function: voltage-gated anion channel activity SoyBaseN/AISS
KOG3126 KOG Porin/voltage-dependent anion-selective channel protein JGI ISS
PTHR11743Panther VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL JGI ISS
PTHR11743:SF14Panther VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL-RELATED JGI ISS
PF01459PFAM Eukaryotic porin JGI ISS
UniRef100_B0M197UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peroxisomal voltage-dependent anion-selective channel protein n=1 Tax=Glycine max RepID=B0M197_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI000233E87EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E87E related cluster n=1 Tax=unknown RepID=UPI000233E87E SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g49070
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49070
ParalogEvidenceComments
Glyma09g37570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49070 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g255700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g49070
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g49070
>Glyma18g49070.1   sequence type=CDS   gene model=Glyma18g49070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCGACTGGAGTTGCTATTACAGCATCAGGAACCAGGAAAAGTGAACTGTTTCTGGCTGATGTCAACACCCAGTTGAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAGATTCTAATCTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAGGTGGAAGTTCAGTACTTGCATGACTATGCTGGAATAAGCACCAGTGTTGGGTTGACAGCAAACCCAATTGTCAACTTCTCTGGTGTTATAGGAACTAATGTTCTTGCTCTTGGTGCTGATCTTTCTTTTGACTCCAAAATTGGGGAGTTAACAAAATCCAATGCTGGACTGAGCTTCACTAAAGATGACTTGATTGCCTCATTGACTCTGAATGACAAAGGTGATGCTTTGAATGCTGCATATTACCATGTAGTTAACCCCTTGACCAACACTGCTGTTGGTGCTGAAGTGACCCATAGATTCTCAACTAATGAGAACACTCTCACCCTTGGTACCCAGCATCAGTTGGATCCATTGACCACATTGAAGGCACGTGTGAACAACTTTGGAAGGACAAGTGCTCTGATCCAGCACGAGTGGCGTCCCAAATCGTTCTTTACCATTTCTGGTGAGGTAGACACCAAGGCCATTGAAAAGAGTGCTAAGGTTGGATTGAGTTTGGTTCTCAAACCCTAA
Predicted protein sequences of Glyma18g49070
>Glyma18g49070.1   sequence type=predicted peptide   gene model=Glyma18g49070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKGPGLYSDIGKKARDLLFKDYHSDQKFTITTYSPTGVAITASGTRKSELFLADVNTQLKNKNITTDIKVDTDSNLFTTITVNEPAPGLKAIFSFKVPDQRSGKVEVQYLHDYAGISTSVGLTANPIVNFSGVIGTNVLALGADLSFDSKIGELTKSNAGLSFTKDDLIASLTLNDKGDALNAAYYHVVNPLTNTAVGAEVTHRFSTNENTLTLGTQHQLDPLTTLKARVNNFGRTSALIQHEWRPKSFFTISGEVDTKAIEKSAKVGLSLVLKP*






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