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Report for Sequence Feature Glyma18g49040

Feature Type:gene_model
Chromosome:Gm18
Start:58438442
stop:58439473
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g49040
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G39950AT Annotation by Michelle Graham. TAIR10: thioredoxin 2 | chr5:15990885-15991881 REVERSE LENGTH=133 SoyBaseE_val: 2.00E-66ISS
GO:0000103GO-bp Annotation by Michelle Graham. GO Biological Process: sulfate assimilation SoyBaseN/AISS
GO:0000280GO-bp Annotation by Michelle Graham. GO Biological Process: nuclear division SoyBaseN/AISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0006662GO-bp Annotation by Michelle Graham. GO Biological Process: glycerol ether metabolic process SoyBaseN/AISS
GO:0007000GO-bp Annotation by Michelle Graham. GO Biological Process: nucleolus organization SoyBaseN/AISS
GO:0045454GO-bp Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0015035GO-mf Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity SoyBaseN/AISS
GO:0016671GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor SoyBaseN/AISS
KOG0907 KOG Thioredoxin JGI ISS
PTHR10438Panther THIOREDOXIN-RELATED JGI ISS
PTHR10438:SF50Panther SUBFAMILY NOT NAMED JGI ISS
PF00085PFAM Thioredoxin JGI ISS
UniRef100_I1N4A4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Thioredoxin n=1 Tax=Glycine max RepID=I1N4A4_SOYBN SoyBaseE_val: 1.00E-91ISS
UniRef100_I1N4A4UniRef Annotation by Michelle Graham. Best UniRef hit: Thioredoxin n=1 Tax=Glycine max RepID=I1N4A4_SOYBN SoyBaseE_val: 1.00E-91ISS

Expression Patterns of Glyma18g49040
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g49040
ParalogEvidenceComments
Glyma09g37590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g49040 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g255400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g49040
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g49040
>Glyma18g49040.3   sequence type=CDS   gene model=Glyma18g49040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGGTATACTTTCTGGGCTTCTTGGCAGCGACGCGGCGGCGGCGGCGTCTTCGCCGGAGAGTTCTACTTCTAGAGTCTCCTCCTTCCACTCGTCGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTCGTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAGCCAGCGATTCACGCCATGGCCGACAAGTTCAACGACGTTGACTTCGTCAAGATCGACGTCGACGAATTACCTGATGTGGCGCAGGAGTTTCAGGTGCAGGCGATGCCGACTTTCGTGTTGTGGAAGAAAGGGAAGGAAGTCGACAAGGTTGTGGGCGCAAAGAAGGACGAGCTCGAGAAGAAGATTGAGAAACATCGATCGTGA
Predicted protein sequences of Glyma18g49040
>Glyma18g49040.3   sequence type=predicted peptide   gene model=Glyma18g49040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGILSGLLGSDAAAAASSPESSTSRVSSFHSSPRWQLYFNEIKDTDKLVVIDFSASWCGPCKFIEPAIHAMADKFNDVDFVKIDVDELPDVAQEFQVQAMPTFVLWKKGKEVDKVVGAKKDELEKKIEKHRS*






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