Glyma18g48980 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g48980

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58376606
stop:	58381414
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G33370	AT	Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein \| chr5:12602773-12604670 REVERSE LENGTH=366	SoyBase	E_val: 0	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
PTHR22835	Panther	ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR22835:SF39	Panther	LATERAL SIGNALING TARGET PROTEIN 2	JGI		ISS
PF00657	PFAM	GDSL-like Lipase/Acylhydrolase	JGI		ISS
UniRef100_B9S7Q2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S7Q2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N498	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N498_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48980

Paralog	Evidence	Comments
Glyma09g37640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g254800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g48980

Limit To All Plant Sequences

>Glyma18g48980.1   sequence type=CDS   gene model=Glyma18g48980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCCTCGTCAAGTGTTGTTCCTATGGTACTTCTAGGTTTAGTTATATTACTACTTGGTGTTATTGTCCCTAGAAGTGAAGCCAGGCCAAGAGCATTCTTTGTGTTTGGAGATTCGCTTGTTGACAATGGAAACAACAACTATTTGCAAACCATTGCTCGTGCTAATGCCCCTCCTTATGGAATTGACTATCCAACTCATAGAGCAACTGGACGCTTCTCTAACGGCTTCAACATTCCGGATTTTATCAGTCAGCAACTAGGTGCTGAGTCTACAATGCCTTACTTGAGCCCGGACTTAACGAGAGAAAATCTCTTAGTTGGTGCCAATTTTGCTTCAGCTGGCGTTGGAATCCTTAACGATACAGGAGATCAGTTTATGAACATAATTAAAATGCACAAACAAATAGATTATTTTAAAGAGTACCAACAACGACTGAGTGCTCTAATTGGTGTCTCACGAACTAAACGACTCGTGAATCAAGCGTTGATCCTTATCACTGTTGGTGGCAATGATTTTGTAAACAACTACTTCCTAGTGGACTCTACTGCAAGGTCTCGTCAATACTCACTCCCAGACTATGTCAAGTTTCTCATCAATCGATATAGCAAGCACTTGCAGAGGCTATATAATCTGGGAGCTCGGCGAGTTCTTGTGACAGGGTCAGGGCCATTGGGTTGTGCCCCTGCAGAATTGGCCATGCGAGGCAAAAATGGAGAATGTTCTGCTGATCTACAACGTGCTGCATCATTGTACAACCCTCAATTAGAGCAAATGCTACTTGAACTTAACAAGAAAATTGGCAGCGACGTTTTCATTGCTGCAAATACAGCACTAATGCACAATGATTTCATCACCAATCCCAATGCTTATGGATTTAACACGTCAAAAGTAGCTTGTTGTGGACAAGGACCCTACAATGGTATGGGGCTATGCTTGCCAGTCTCCAACCTATGCCCCAACCGAGACTTGCATGCATTTTGGGATCCATTCCATCCAACTGAAAAGGCAAACAAACTTGTTGTAGAACAAATTATGTCTGGCTCTACAAAGTATATGAAGCCAATGAACCTCAGCACCATTCTGACCTTGGATGCTCGAACACATTCATGA

Predicted protein sequences of Glyma18g48980

Limit To All Plant Sequences

>Glyma18g48980.1   sequence type=predicted peptide   gene model=Glyma18g48980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPSSSVVPMVLLGLVILLLGVIVPRSEARPRAFFVFGDSLVDNGNNNYLQTIARANAPPYGIDYPTHRATGRFSNGFNIPDFISQQLGAESTMPYLSPDLTRENLLVGANFASAGVGILNDTGDQFMNIIKMHKQIDYFKEYQQRLSALIGVSRTKRLVNQALILITVGGNDFVNNYFLVDSTARSRQYSLPDYVKFLINRYSKHLQRLYNLGARRVLVTGSGPLGCAPAELAMRGKNGECSADLQRAASLYNPQLEQMLLELNKKIGSDVFIAANTALMHNDFITNPNAYGFNTSKVACCGQGPYNGMGLCLPVSNLCPNRDLHAFWDPFHPTEKANKLVVEQIMSGSTKYMKPMNLSTILTLDARTHS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain