Report for Sequence Feature Glyma18g48920
Feature Type: gene_model
Chromosome: Gm18
Start: 58334493
stop: 58336455
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g48920
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G40010 AT
Annotation by Michelle Graham. TAIR10: AAA-ATPase 1 | chr5:16020218-16021762 REVERSE LENGTH=514
SoyBase E_val: 0 ISS
GO:0001666 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to hypoxia
SoyBase N/A ISS
GO:0009862 GO-bp
Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway
SoyBase N/A ISS
GO:0010154 GO-bp
Annotation by Michelle Graham. GO Biological Process: fruit development
SoyBase N/A ISS
GO:0010310 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process
SoyBase N/A ISS
GO:0010431 GO-bp
Annotation by Michelle Graham. GO Biological Process: seed maturation
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016887 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATPase activity
SoyBase N/A ISS
GO:0017111 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity
SoyBase N/A ISS
KOG0743
KOG
AAA+-type ATPase
JGI ISS
PTHR23070 Panther
BCS1 AAA-TYPE ATPASE
JGI ISS
PTHR23070:SF1 Panther
AAA-TYPE ATPASE-RELATED
JGI ISS
PF00004 PFAM
ATPase family associated with various cellular activities (AAA)
JGI ISS
UniRef100_G7KK16 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial chaperone BCS1 n=1 Tax=Medicago truncatula RepID=G7KK16_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1N492 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N492_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g48920
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g48920
Paralog Evidence Comments
Glyma09g37660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g48920 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g254200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g48920
Coding sequences of Glyma18g48920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g48920.1 sequence type=CDS gene model=Glyma18g48920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGGAACTATGGACACAAATGGGCTCATTGATGGCCACAATCATGTTTGTGTATGCCATGGTTGAGCGTTTCTTCCCGGCGGCGCTTCGCGACACTCTTCAAATCCACACTCAGAAAGTGGTGAACCTCTTGTACCCTTATGTCCAAATCACCTTCCCTGAGTTCTCAGGGGAGAGACTCAAGCGTAGCGAAGCCTACACTGCCATCCAAACCTACCTTAGTGAGAATTCTTCACAACTAGCCAAAAGACTGAAAGCTGAAGTAGTGAAAGATAGCCAGAACCCTTTGGTGCTTAGCATGGATGACGACGAAGAGGTCACCGATGAGTTCCAAGGAGTGAAGCTTTGGTGGGCTGCTAGCAAAACTGCCTCTAACCCTCATGCATATTCCTTCTCTTATTATTCTCCCCCTGATGGAAAGAGATACTTCAAGCTCACTTTCCACAAAAAGCATAGGGATCTCATCACCATTTCTTACATCAAACATGTTTTGGAAGAGGGGAAGGAAATTGCCCTGAGAAACAGGCAGAGGAAGTTGTACACCAACAATCCAAGTAGTGGTTGGTATGGCTACAAACAGTCAAAATGGAGCCACATCGTGTTCGAGCACCCTGCCACGTTCGAGACTCTTGCAATGGATCATAGGAAGAAGGAAGAGATCATCAATGACCTTGTCAAGTTCAGGAATGGGAAGGATTACTATGCAAAGATTGGAAAGGCTTGGAAGCGTGGCTACTTACTCTATGGTCCTCCTGGGACCGGTAAGTCTACTATGATAGCTGCAATGGCTAATTTCATGAACTATGATGTCTATGATCTTGAGCTGACTGCAGTGAAGGACAACACTGAGTTGAGGAAGTTGTTGATTGAGACTTCTAGTAAGGCTATTATAGTTGTGGAAGACATTGATTGCTCGCTCGATCTCACTGGCCAGAGGAACATGAGAAGGGAAAGGGGTGAGGAAGAGGAACCAAAAGATCCTAGTAAAAAAGATGAAGAGGAGGGTAACAAGAATAGTAAGGTAACTCTATCAGGGTTGTTGAATTTCATTGATGGCATTTGGTCAGCATGTGGGGGAGAGAGGATTATTATTTTCACAACAAACTTTGTGGACAAGCTTGATCCTGCTCTTATTAGGACAGGTAGGATGGACAAACACATTGAATTGTCCTATTGCCGCTTTGAGGCATTCAAGGTTCTTGCCAAGAACTACTTGGATGTTGATTCGCACAATTTGTTCGCTAGAATTGCGAATTTGTTGGAAGTGACTAATGTGACTCCTGCTGATGTTGCTGAGAATCTCATGCCTAAGTGTGTGAATGAAGATGTTGAAGCTTGCTTGCTGAATTTGATTCAATCTCTTGAGAGAAAGGTGACAGAAGAAGAAGAGGAAGAAGCAGGGTTGAATGAAGAAAAGGACAAGGAGGAACCTACTCAGCAGGAGAACAAAAATAATGGGCACAGTGTGGAAGATGTGAAGGAAAATGGATTCATGCTTTGA
Predicted protein sequences of Glyma18g48920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g48920.1 sequence type=predicted peptide gene model=Glyma18g48920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGELWTQMGSLMATIMFVYAMVERFFPAALRDTLQIHTQKVVNLLYPYVQITFPEFSGERLKRSEAYTAIQTYLSENSSQLAKRLKAEVVKDSQNPLVLSMDDDEEVTDEFQGVKLWWAASKTASNPHAYSFSYYSPPDGKRYFKLTFHKKHRDLITISYIKHVLEEGKEIALRNRQRKLYTNNPSSGWYGYKQSKWSHIVFEHPATFETLAMDHRKKEEIINDLVKFRNGKDYYAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFMNYDVYDLELTAVKDNTELRKLLIETSSKAIIVVEDIDCSLDLTGQRNMRRERGEEEEPKDPSKKDEEEGNKNSKVTLSGLLNFIDGIWSACGGERIIIFTTNFVDKLDPALIRTGRMDKHIELSYCRFEAFKVLAKNYLDVDSHNLFARIANLLEVTNVTPADVAENLMPKCVNEDVEACLLNLIQSLERKVTEEEEEEAGLNEEKDKEEPTQQENKNNGHSVEDVKENGFML*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
