Glyma18g48890 - SoyBase

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Report for Sequence Feature Glyma18g48890

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58303653
stop:	58309473
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61330	AT	Annotation by Michelle Graham. TAIR10: rRNA processing protein-related \| chr5:24657287-24660103 REVERSE LENGTH=436	SoyBase	E_val: 9.00E-144	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2773	KOG	Apoptosis antagonizing transcription factor/protein transport protein	JGI		ISS
PTHR15565	Panther	AATF PROTEIN (APOPTOSIS ANTAGONIZING TRANSCRIPTION FACTOR)	JGI		ISS
PF08164	PFAM	TRAUB (NUC102) domain	JGI		ISS
UniRef100_G7KAI8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein AATF n=1 Tax=Medicago truncatula RepID=G7KAI8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E879	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E879 related cluster n=1 Tax=unknown RepID=UPI000233E879	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g48890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g253900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g48890

Limit To All Plant Sequences

>Glyma18g48890.2   sequence type=transcript   gene model=Glyma18g48890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACTCATTCACTCAGCAGCCTGGCTTCCCTAGGGTTTTCTTCTCACTTTACGACCACTGCAGCGCCATCGCTTTTCGCGGCACCGCGACCCGCGCCACCTCTTCAGTCTTCATTCTTCTCACTTCACGAATCACGACCGAACCGTGAAAAACGTTCCCAGCCTCCCACCGTGCCACCTCTTCAGGTGTAAAAATGGGGTTATCTGCCAAGAAATCTAGAAAAAGAGGAAAAAGGGACAGTGATTCAGATGAATACGATAATATGGAGTATGAAGAGGTGGAGGATGATTACGATGATGATGGTGAGGAGGAGGATGAAGAGGAAGAACATGGAGAGGAAGTAACAGATGATGAAGATGGGACAGGAGAGCATGGTGAATGGAAGAATGATGAGATGGAACAGCTTGAGAAAGAATATAGAGATCTTCATCACCAGGAGCTAGATACTTTGAAGAACTTGAAGCATCATAAGGATGAAGATCTTCTTAAGGGTCAAGCTGTGAAAAGCCAGAAGGCCCTCTGGTACAAAATTCTTGAGCTTAGATTCTTGCTTCAGAAGCCTTTCTCAAGCTCCAATAGGTTACCACAGGAATCAATCAAGTCTTTGTTCTGTGAAACTGATGAGACAGTTAGAGTAGCATATTCAGATCTGATGACTTCATCCAAAGAGACTTTAGATTCTATATTGGAACTGCAAGAGGCTCTCTTTGCTAAGAATCCATCAATTACCCAAGCCATAGTTGGTTCAGAAGGTTCATCAAAAGATTTAGAAGTTTATAAGCATTTGGATGGCAATCTTGATCAGGAGTGGTCACAGATTTCACAGATGCACAAGAGTATAACATCTTTCAGAGACAAGTCAATCAACAAATGGCAGCGGGTGACACAAGTGACTACTGGTGCTGCTGCCATTAAGGGCAAATTGCATGCTTTTAATCAGGATATTAGCAATCAAGTCGCTGCTTATATGAGAGATCCCAGTAGACTAATCAAGCAGATGCGGGTGAGAAGATCAGATGTTAATATATTTTTATCTGTTCCAGAGGTTGTTGGTGAACCTAAAGAAGCGGAAACATGTACTGATGGTGATCCTGAACTTCTGGATGACTCTGAATTTTATCAACAATTATTGAAAGAATTTTTTGAGACAGTTGATCCTTCATCATCTGGTTTTGCACTTGTACTGTAGGGATCTCTATTAGCATTTCCCTGGGATATATAAAATATGAATGATTCATAATGCTTGCTGCTTCTGAAAACTGTGCCATTTATGCCAAGCTTGTGAGAATAGTAAAAAAAAAAGCACGAAGGTTCCCCTAAACAGCCAGTTGTAAATTTTCAGAGGCTGAAATTTACAGAAAGCATTTTATGCTTTGAAGAGAATGCAACCAAAGAAAAGAAAAATTGTTGATCGTCGCGCCTCAAAAAGTCGGAAGATAAGGTATAATGTTCACGAAAAGATAGTAAATTTTATGGCCCCACTACCTGCCAATGTTCCTCCCATGGCTCCGAAGTTGTTTGAGAATCTGTTTGGATTGAAGACACAAAGATCATCTGCTGCAGCCTCATAATCATGTTGGCAGACAGAAATATTGGTCTCACAGTTTTGCCCTTACTCTTCATATGTTGTACACTAATTTGATTTCTACATGATGCTGATTATTGAGGAATTTGATATTTTTTCCTCATGAGACAATTTTGCTGTAAATCTATTCAGATGCCAATATAATAGATTATAGTTCTGAATTTGCTTCAACATTTCAGTTTTGAAATGCATGTTTGCTACCATATTTTGTTTTATAAAACCAGCCTCTTCCATGAATTGTTGG

Coding sequences of Glyma18g48890

Limit To All Plant Sequences

>Glyma18g48890.1   sequence type=CDS   gene model=Glyma18g48890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTATCTGCCAAGAAATCTAGAAAAAGAGGAAAAAGGGACAGTGATTCAGATGAATACGATAATATGGAGTATGAAGAGGTGGAGGATGATTACGATGATGATGGTGAGGAGGAGGATGAAGAGGAAGAACATGGAGAGGAAGTAACAGATGATGAAGATGGGACAGGAGAGCATGGTGAATGGAAGAATGATGAGATGGAACAGCTTGAGAAAGAATATAGAGATCTTCATCACCAGGAGCTAGATACTTTGAAGAACTTGAAGCATCATAAGGATGAAGATCTTCTTAAGGGTCAAGCTGTGAAAAGCCAGAAGGCCCTCTGGTACAAAATTCTTGAGCTTAGATTCTTGCTTCAGAAGCCTTTCTCAAGCTCCAATAGGTTACCACAGGAATCAATCAAGTCTTTGTTCTGTGAAACTGATGAGACAGTTAGAGTAGCATATTCAGATCTGATGACTTCATCCAAAGAGACTTTAGATTCTATATTGGAACTGCAAGAGGCTCTCTTTGCTAAGAATCCATCAATTACCCAAGCCATAGTTGGTTCAGAAGGTTCATCAAAAGATTTAGAAGTTTATAAGCATTTGGATGGCAATCTTGATCAGGAGTGGTCACAGATTTCACAGATGCACAAGAGTATAACATCTTTCAGAGACAAGTCAATCAACAAATGGCAGCGGGTGACACAAGTGACTACTGGTGCTGCTGCCATTAAGGGCAAATTGCATGCTTTTAATCAGGATATTAGCAATCAAGTCGCTGCTTATATGAGAGATCCCAGTAGACTAATCAAGCAGATGCGGGTGAGAAGATCAGATGTTAATATATTTTTATCTGTTCCAGAGGTTGTTGGTGAACCTAAAGAAGCGGAAACATGTACTGATGGTGATCCTGAACTTCTGGATGACTCTGAATTTTATCAACAATTATTGAAAGAATTTTTTGAGACAGTTGATCCTTCATCATCTGAGAAAGCATTTTATGCTTTGAAGAGAATGCAACCAAAGAAAAGAAAAATTGTTGATCGTCGCGCCTCAAAAAGTCGGAAGATAAGGTATAATGTTCACGAAAAGATAGTAAATTTTATGGCCCCACTACCTGCCAATGTTCCTCCCATGGCTCCGAAGTTGTTTGAGAATCTGTTTGGATTGAAGACACAAAGATCATCTGCTGCAGCCTCATAA

>Glyma18g48890.2   sequence type=CDS   gene model=Glyma18g48890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTATCTGCCAAGAAATCTAGAAAAAGAGGAAAAAGGGACAGTGATTCAGATGAATACGATAATATGGAGTATGAAGAGGTGGAGGATGATTACGATGATGATGGTGAGGAGGAGGATGAAGAGGAAGAACATGGAGAGGAAGTAACAGATGATGAAGATGGGACAGGAGAGCATGGTGAATGGAAGAATGATGAGATGGAACAGCTTGAGAAAGAATATAGAGATCTTCATCACCAGGAGCTAGATACTTTGAAGAACTTGAAGCATCATAAGGATGAAGATCTTCTTAAGGGTCAAGCTGTGAAAAGCCAGAAGGCCCTCTGGTACAAAATTCTTGAGCTTAGATTCTTGCTTCAGAAGCCTTTCTCAAGCTCCAATAGGTTACCACAGGAATCAATCAAGTCTTTGTTCTGTGAAACTGATGAGACAGTTAGAGTAGCATATTCAGATCTGATGACTTCATCCAAAGAGACTTTAGATTCTATATTGGAACTGCAAGAGGCTCTCTTTGCTAAGAATCCATCAATTACCCAAGCCATAGTTGGTTCAGAAGGTTCATCAAAAGATTTAGAAGTTTATAAGCATTTGGATGGCAATCTTGATCAGGAGTGGTCACAGATTTCACAGATGCACAAGAGTATAACATCTTTCAGAGACAAGTCAATCAACAAATGGCAGCGGGTGACACAAGTGACTACTGGTGCTGCTGCCATTAAGGGCAAATTGCATGCTTTTAATCAGGATATTAGCAATCAAGTCGCTGCTTATATGAGAGATCCCAGTAGACTAATCAAGCAGATGCGGGTGAGAAGATCAGATGTTAATATATTTTTATCTGTTCCAGAGGTTGTTGGTGAACCTAAAGAAGCGGAAACATGTACTGATGGTGATCCTGAACTTCTGGATGACTCTGAATTTTATCAACAATTATTGAAAGAATTTTTTGAGACAGTTGATCCTTCATCATCTGGTTTTGCACTTGTACTGTAG

Predicted protein sequences of Glyma18g48890

Limit To All Plant Sequences

>Glyma18g48890.1   sequence type=predicted peptide   gene model=Glyma18g48890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLSAKKSRKRGKRDSDSDEYDNMEYEEVEDDYDDDGEEEDEEEEHGEEVTDDEDGTGEHGEWKNDEMEQLEKEYRDLHHQELDTLKNLKHHKDEDLLKGQAVKSQKALWYKILELRFLLQKPFSSSNRLPQESIKSLFCETDETVRVAYSDLMTSSKETLDSILELQEALFAKNPSITQAIVGSEGSSKDLEVYKHLDGNLDQEWSQISQMHKSITSFRDKSINKWQRVTQVTTGAAAIKGKLHAFNQDISNQVAAYMRDPSRLIKQMRVRRSDVNIFLSVPEVVGEPKEAETCTDGDPELLDDSEFYQQLLKEFFETVDPSSSEKAFYALKRMQPKKRKIVDRRASKSRKIRYNVHEKIVNFMAPLPANVPPMAPKLFENLFGLKTQRSSAAAS*

>Glyma18g48890.2   sequence type=predicted peptide   gene model=Glyma18g48890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLSAKKSRKRGKRDSDSDEYDNMEYEEVEDDYDDDGEEEDEEEEHGEEVTDDEDGTGEHGEWKNDEMEQLEKEYRDLHHQELDTLKNLKHHKDEDLLKGQAVKSQKALWYKILELRFLLQKPFSSSNRLPQESIKSLFCETDETVRVAYSDLMTSSKETLDSILELQEALFAKNPSITQAIVGSEGSSKDLEVYKHLDGNLDQEWSQISQMHKSITSFRDKSINKWQRVTQVTTGAAAIKGKLHAFNQDISNQVAAYMRDPSRLIKQMRVRRSDVNIFLSVPEVVGEPKEAETCTDGDPELLDDSEFYQQLLKEFFETVDPSSSGFALVL*

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