Glyma18g48880 - SoyBase

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Report for Sequence Feature Glyma18g48880

Feature Type:	gene_model
Chromosome:	Gm18
Start:	58282344
stop:	58286648
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g48880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G60390	AT	Annotation by Michelle Graham. TAIR10: homeobox-leucine zipper protein 3 \| chr3:22320788-22322370 REVERSE LENGTH=315	SoyBase	E_val: 3.00E-85	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0483	KOG	Transcription factor HEX, contains HOX and HALZ domains	JGI		ISS
PTHR24326	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24326:SF218	Panther		JGI		ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
PF02183	PFAM	Homeobox associated leucine zipper	JGI		ISS
PF04618	PFAM	HD-ZIP protein N terminus	JGI		ISS
UniRef100_B9RD19	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Homeobox protein, putative n=1 Tax=Ricinus communis RepID=B9RD19_RICCO	SoyBase	E_val: 3.00E-88	ISS
UniRef100_UPI0001BA8D67	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001BA8D67 related cluster n=1 Tax=unknown RepID=UPI0001BA8D67	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g48880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g48880

Paralog	Evidence	Comments
Glyma09g37680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g48880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g253800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g48880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g48880

Limit To All Plant Sequences

>Glyma18g48880.1   sequence type=CDS   gene model=Glyma18g48880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAGAAAGATGATGAGTTTGGGTTGAGTTTGAGTTTGAGTTTGGGGGGAGTGAATCAACAACAACAACCCCCTTCTTTGAATCATATGCACCAGCCTCAACAACAACAACCTGTTCCCATGAATCACAATAAGACTCTCTTTGGTGATTTGTTTCAGTTACCAGATCGGAGCTCCGATATGGTACGAGGAATCGACGTTAATTCGGCGGCGGAGTACGATGGCGTTTCCTCGCCGAACAGCGCCGTCTCGAGCGTGAGCGGCGGCGGCAAGCAGAGCGAGAGGGACGACGATAATGCCGCCGCCGTGGCTGGTGAGAGGACCTCGTGCTCGCGAGGGAGCGACGACGATGACGGTGGTGGCAGCGACGCCGCGAGGAAGAAGCTGAGGCTGACGAAAGAACAGTCCATGGTGTTGGAAGAAACGTTCAAGGAGCACAACACCCTGAATCCGAAACGGAAGCAAGCGTTGGCAGAGGAGTTGAATCTGAAGCCCAGACAAGTAGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACTAAGCTGAAGCAAACTGAAGTGGATTGTGAATACTTAAAGAAATGCTGTGAGAATTTAACTGAAGAGAATAGAAGGTTGCACAAGGAGGTTCAAGAGCTTAGGGCACTGAAATTATCCCCACAAATGTACATGCATATGAACCCTCCCACCACTCTTACAATGTGCCCTTCTTGTGAGCGTACTCACTCCTCTGCATCCTCCTCCCCTGCTACCATCCACTCAACAGTGGCGGCAGCCACCTCTAGCAATTGCAAACTGCTTGGTGCAAACATCCGGCGGCCGGTGCCCGTCAACACTTGGCCATTTGAAGGCCCAATTCCCCGGCCATAA

Predicted protein sequences of Glyma18g48880

Limit To All Plant Sequences

>Glyma18g48880.1   sequence type=predicted peptide   gene model=Glyma18g48880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEKDDEFGLSLSLSLGGVNQQQQPPSLNHMHQPQQQQPVPMNHNKTLFGDLFQLPDRSSDMVRGIDVNSAAEYDGVSSPNSAVSSVSGGGKQSERDDDNAAAVAGERTSCSRGSDDDDGGGSDAARKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCENLTEENRRLHKEVQELRALKLSPQMYMHMNPPTTLTMCPSCERTHSSASSSPATIHSTVAAATSSNCKLLGANIRRPVPVNTWPFEGPIPRP*

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